CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45276	Canola	cytosol	76.85	79.51
CDX84020	Canola	nucleus	52.68	73.36
CDY62788	Canola	cytosol	16.11	40.68
CDX89548	Canola	cytosol	20.13	35.71
CDX89545	Canola	cytosol	20.13	35.71
CDY38929	Canola	cytosol	20.13	35.5
CDY21434	Canola	cytosol	7.72	32.39
KXG32223	Sorghum	nucleus, plastid	20.13	31.41
CDY41093	Canola	cytosol	80.54	31.09
AT1G14650.1	Thale cress	cytosol	75.84	28.79
Bra016688.1-P	Field mustard	cytosol	57.72	24.86
VIT_01s0011g02040.t01	Wine grape	cytosol	67.45	24.69
KRG90981	Soybean	nucleus	66.11	24.69
KRH35776	Soybean	cytosol	65.77	24.47
KRH36511	Soybean	cytosol	66.11	24.44
PGSC0003DMT400007349	Potato	cytosol	65.1	24.16
KRH12470	Soybean	cytosol, endoplasmic reticulum, nucleus	60.4	23.97
PGSC0003DMT400018892	Potato	cytosol	63.76	23.69
GSMUA_Achr3P03970_001	Banana	cytosol	62.08	23.63
Solyc04g005690.2.1	Tomato	cytosol, nucleus	59.4	23.05
CDY21696	Canola	cytosol	26.17	22.87
Solyc02g081960.2.1	Tomato	cytosol, nucleus	58.05	22.5
GSMUA_Achr9P12650_001	Banana	cytosol	60.07	22.18
CDX83169	Canola	plasma membrane	7.72	21.9
CDX81896	Canola	cytosol	15.77	20.35
CDY58992	Canola	cytosol	15.77	20.26
EES00535	Sorghum	cytosol	53.69	19.93
Os02t0245000-01	Rice	cytosol	52.68	19.82
TraesCS3B01G211900.1	Wheat	cytosol	50.67	19.69
Zm00001d008293_P001	Maize	cytosol	52.68	19.48
Zm00001d040343_P003	Maize	cytosol	52.68	19.45
TraesCS3A01G503600.1	Wheat	cytosol	49.66	18.71
TraesCS3D01G510100.1	Wheat	cytosol	49.66	18.64
CDY65449	Canola	cytosol	24.16	18.18
CDY69291	Canola	cytosol, golgi	10.07	18.07
TraesCS3B01G566900.1	Wheat	cytosol	50.0	18.0
HORVU3Hr1G110920.1	Barley	cytosol	49.33	17.95
CDY09657	Canola	cytosol, nucleus, plastid	23.83	15.57
TraesCS3B01G212000.1	Wheat	cytosol	29.53	15.22
CDY09653	Canola	nucleus	24.5	14.93
CDY71524	Canola	cytosol	13.76	14.49
CDX71844	Canola	cytosol, golgi, plasma membrane	9.4	13.86
CDX71843	Canola	cytosol	10.07	13.76
CDY38128	Canola	cytosol	15.1	11.25
CDY72308	Canola	cytosol	21.48	9.8
CDY38126	Canola	cytosol	25.5	9.22
CDY58090	Canola	cytosol	14.77	8.43
CDY44531	Canola	cytosol	15.1	8.08
CDY52036	Canola	cytosol, plastid	1.68	2.69
CDY45277	Canola	cytosol, plastid	1.34	2.16
CDX84019	Canola	cytosol	1.01	1.6

Protein Annotations

Gene3D:1.10.10.790	MapMan:16.4.1.2.3.1	GO:A0A078IQ78	UniProt:A0A078IQ78	EnsemblPlants:CDY52037	ProteinID:CDY52037
ProteinID:CDY52037.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00004743001	InterPro:IPR000061
InterPro:IPR035967	PFAM:PF01805	PFAM:PF12230	PFscan:PS50128	PANTHER:PTHR15316	InterPro:SF3A1
SMART:SM00648	SUPFAM:SSF109905	InterPro:SWAP/Surp_sf	InterPro:Surp	UniParc:UPI0004EE5EC4	SEG:seg

Description

BnaA08g31500DBnaA08g31500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IQ78]

Coordinates

chrLK033048:-:71296..73211

Molecular Weight (calculated)

33569.5 Da

IEP (calculated)

4.328

GRAVY (calculated)

-0.535

Length

298 amino acids

Sequence
(BLAST)

001: MLSSMQILPL EAPPTDGNLG PLPPSQLTDQ EIEERELQSE QKSSNQAPES VATHTRTIGI IHPPPDIRSI VEKTAQFVSK NGLEFEKRIM ASNAKNAKFN
101: FLTSSDPYHA FYQHKLAEYR AQNEDGAQGS DADGADLQVD GGGDEVRLPE GITGEELEYI KLTAQFVARN GKSFLTGLQS RENNNPQFYF MKPTHSMFPL
201: FTALVDAYFD VLKPPEDLKE KLRKKEDEKE QERVQMAMID WHDFVVVESI DFADDEDEEL PPPMTLEEVI RRSKVSAAME EDDIPIASLV RLLFLLLA

Best Arabidopsis Sequence Match ( AT1G14650.1 )
(BLAST)

001: MFSSMQILPL EAPPTDGKLG PLPPSQLTDQ EVEERELQAE QNNSNLAPPA AVATHTRTIG IIHPPPDIRT IVEKTAQFVS KNGLEFEKRI IVSNEKNAKF
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR

Arabidopsis Description

Probable splicing factor 3A subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.