CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52037	Canola	cytosol	79.51	76.85
CDX84020	Canola	nucleus	44.44	59.81
CDY21434	Canola	cytosol	8.33	33.8
CDY41093	Canola	cytosol	83.68	31.22
CDX89548	Canola	cytosol	16.32	27.98
CDX89545	Canola	cytosol	16.32	27.98
AT1G14650.1	Thale cress	cytosol	76.04	27.9
CDY38929	Canola	cytosol	15.97	27.22
CDY62788	Canola	cytosol	10.76	26.27
VIT_01s0011g02040.t01	Wine grape	cytosol	67.01	23.71
PGSC0003DMT400007349	Potato	cytosol	65.97	23.66
KRG90981	Soybean	nucleus	64.93	23.43
KRH35776	Soybean	cytosol	64.58	23.22
KRH36511	Soybean	cytosol	64.93	23.2
PGSC0003DMT400018892	Potato	cytosol	63.89	22.94
CDX83169	Canola	plasma membrane	8.33	22.86
GSMUA_Achr3P03970_001	Banana	cytosol	61.81	22.73
Bra016688.1-P	Field mustard	cytosol	54.51	22.69
KXG32223	Sorghum	nucleus, plastid	14.93	22.51
Solyc04g005690.2.1	Tomato	cytosol, nucleus	59.72	22.4
KRH12470	Soybean	cytosol, endoplasmic reticulum, nucleus	57.64	22.1
Solyc02g081960.2.1	Tomato	cytosol, nucleus	58.68	21.98
GSMUA_Achr9P12650_001	Banana	cytosol	61.11	21.81
CDY21696	Canola	cytosol	25.69	21.7
CDY69291	Canola	cytosol, golgi	11.81	20.48
Os02t0245000-01	Rice	cytosol	52.78	19.19
EES00535	Sorghum	cytosol	53.47	19.18
CDX81896	Canola	cytosol	15.28	19.05
CDY58992	Canola	cytosol	15.28	18.97
Zm00001d008293_P001	Maize	cytosol	52.43	18.73
Zm00001d040343_P003	Maize	cytosol	52.43	18.71
TraesCS3B01G211900.1	Wheat	cytosol	48.96	18.38
TraesCS3A01G503600.1	Wheat	cytosol	48.61	17.7
TraesCS3D01G510100.1	Wheat	cytosol	48.61	17.63
TraesCS3B01G566900.1	Wheat	cytosol	48.96	17.03
HORVU3Hr1G110920.1	Barley	cytosol	47.57	16.73
CDY65449	Canola	cytosol	22.57	16.41
TraesCS3B01G212000.1	Wheat	cytosol	30.56	15.22
CDY71524	Canola	cytosol	14.93	15.19
CDX71843	Canola	cytosol	11.46	15.14
CDY09657	Canola	cytosol, nucleus, plastid	21.18	13.38
CDY09653	Canola	nucleus	21.88	12.88
CDY38128	Canola	cytosol	17.01	12.25
CDX71844	Canola	cytosol, golgi, plasma membrane	8.33	11.88
CDY72308	Canola	cytosol	19.79	8.73
CDY58090	Canola	cytosol	15.28	8.43
CDY38126	Canola	cytosol	23.96	8.37
CDY44531	Canola	cytosol	15.28	7.9
CDY52036	Canola	cytosol, plastid	2.08	3.23
CDX84019	Canola	cytosol	1.39	2.14
CDY45277	Canola	cytosol, plastid	1.04	1.62

Protein Annotations

Gene3D:1.10.10.790	MapMan:16.4.1.2.3.1	GO:A0A078I5T8	UniProt:A0A078I5T8	EnsemblPlants:CDY45276	ProteinID:CDY45276
ProteinID:CDY45276.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00081718001	InterPro:IPR000061
InterPro:IPR035967	PFAM:PF01805	PFAM:PF12230	PFscan:PS50128	PANTHER:PTHR15316	InterPro:SF3A1
SMART:SM00648	SUPFAM:SSF109905	InterPro:SWAP/Surp_sf	InterPro:Surp	UniParc:UPI0004EEF280	SEG:seg

Description

BnaA06g09460DBnaA06g09460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I5T8]

Coordinates

chrLK032619:+:94994..96495

Molecular Weight (calculated)

32667.6 Da

IEP (calculated)

4.575

GRAVY (calculated)

-0.559

Length

288 amino acids

Sequence
(BLAST)

001: MFSSSQILPL EAPPTDGNLG PLPPSQLTDQ EAEERELQSS SSNQAPESVA THTRTIGIIH PPPDIRSIVE KTAQFVSKNG LEFEKRIHKL AEYRAQNQDG
101: AQGEGQPDLQ AQFRYTVRLP EGITGEELEY IKLTAQFVAR NGKSFLTGLQ SRESNNPQFH FMKPTHSLFS FFTALVDAYF DVLKPPEDLK EKLRKSAADL
201: TTVLERCLHQ DEKEQERVQM AMIDWHDFVV VESIDFADEE DDELPPPMTL EEVIRRSKVS AAMEEDEKIG SRQREILLKL LYLQLLAS

Best Arabidopsis Sequence Match ( AT1G14650.1 )
(BLAST)

001: MFSSMQILPL EAPPTDGKLG PLPPSQLTDQ EVEERELQAE QNNSNLAPPA AVATHTRTIG IIHPPPDIRT IVEKTAQFVS KNGLEFEKRI IVSNEKNAKF
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR

Arabidopsis Description

Probable splicing factor 3A subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.