CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35776	Soybean	cytosol	91.1	90.76
KRH36511	Soybean	cytosol	91.1	90.2
KRH12470	Soybean	cytosol, endoplasmic reticulum, nucleus	84.09	89.35
VIT_01s0011g02040.t01	Wine grape	cytosol	80.58	78.99
Solyc04g005690.2.1	Tomato	cytosol, nucleus	72.56	75.39
Solyc02g081960.2.1	Tomato	cytosol, nucleus	71.55	74.25
PGSC0003DMT400007349	Potato	cytosol	74.56	74.1
GSMUA_Achr3P03970_001	Banana	cytosol	71.93	73.31
PGSC0003DMT400018892	Potato	cytosol	73.31	72.94
CDY52036	Canola	cytosol, plastid	16.54	70.97
CDX84019	Canola	cytosol	16.54	70.59
CDY45277	Canola	cytosol, plastid	16.04	69.19
CDY41093	Canola	cytosol	66.67	68.91
Bra026198.1-P	Field mustard	cytosol, plastid	15.79	68.48
Bra016688.1-P	Field mustard	cytosol	59.15	68.21
GSMUA_Achr9P12650_001	Banana	cytosol	68.67	67.91
AT1G14650.1	Thale cress	cytosol	66.54	67.64
CDX84020	Canola	nucleus	17.79	66.36
CDY52037	Canola	cytosol	24.69	66.11
AT5G06890.1	Thale cress	cytosol	5.39	65.15
CDY45276	Canola	cytosol	23.43	64.93
Os02t0245000-01	Rice	cytosol	61.9	62.37
TraesCS3B01G212000.1	Wheat	cytosol	44.99	62.11
EES00535	Sorghum	cytosol	61.9	61.52
AT1G14640.1	Thale cress	cytosol	56.27	61.09
Zm00001d040343_P003	Maize	cytosol	61.65	60.97
TraesCS3B01G211900.1	Wheat	cytosol	58.27	60.63
Zm00001d008293_P001	Maize	cytosol	61.03	60.42
TraesCS3D01G510100.1	Wheat	cytosol	59.9	60.2
TraesCS3A01G503600.1	Wheat	cytosol	59.4	59.92
HORVU3Hr1G110920.1	Barley	cytosol	59.65	58.12
TraesCS3B01G566900.1	Wheat	cytosol	59.52	57.37
Bra000608.1-P	Field mustard	cytosol	4.01	45.07
CDY21434	Canola	cytosol	4.01	45.07
CDY62788	Canola	cytosol	6.02	40.68
CDY71524	Canola	cytosol	13.53	38.16
KXG32223	Sorghum	nucleus, plastid	8.77	36.65
CDX89545	Canola	cytosol	7.64	36.31
CDX89548	Canola	cytosol	7.64	36.31
AT5G12280.1	Thale cress	cytosol	18.42	35.08
CDY38929	Canola	cytosol	7.39	34.91
CDY65449	Canola	cytosol	17.17	34.6
CDX83169	Canola	plasma membrane	4.51	34.29
Bra032181.1-P	Field mustard	cytosol	8.65	31.94
Bra023557.1-P	Field mustard	mitochondrion	8.77	29.41
CDY09657	Canola	cytosol, nucleus, plastid	16.29	28.51
AT3G49130.1	Thale cress	cytosol	10.9	28.34
AT3G27600.1	Thale cress	cytosol	11.03	28.11
CDY38128	Canola	cytosol	14.04	28.0
CDY21696	Canola	cytosol	11.53	26.98
CDY09653	Canola	nucleus	16.29	26.58
CDX81896	Canola	cytosol	7.39	25.54
CDY58992	Canola	cytosol	7.39	25.43
CDY69291	Canola	cytosol, golgi	5.14	24.7
Bra031050.1-P	Field mustard	cytosol	12.28	24.62
AT4G16200.1	Thale cress	nucleus	7.77	21.53
CDY72308	Canola	cytosol	16.29	19.91
CDX71843	Canola	cytosol	5.39	19.72
CDY58090	Canola	cytosol	12.78	19.54
Bra007503.1-P	Field mustard	cytosol	12.78	19.5
CDY44531	Canola	cytosol	13.28	19.03
CDY38126	Canola	cytosol	18.05	17.48
CDX71844	Canola	cytosol, golgi, plasma membrane	4.01	15.84
AT5G06520.1	Thale cress	cytosol	13.28	15.61
AT1G18050.1	Thale cress	nucleus	3.13	11.16

Protein Annotations

Gene3D:1.10.10.790	EntrezGene:100797261	MapMan:16.4.1.2.3.1	Gene3D:3.10.20.90	EMBL:ACUP02012657	ncoils:Coil
EnsemblPlantsGene:GLYMA_20G126000	GO:GO:0000381	GO:GO:0000389	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005686	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0071004	GO:GO:0071013	UniProt:I1NFU9	InterPro:IPR000061	InterPro:IPR000626
InterPro:IPR035967	ProteinID:KRG90980.1	EnsemblPlants:KRG90981	ProteinID:KRG90981	ProteinID:KRG90981.1	PFAM:PF00240
PFAM:PF01805	PFAM:PF12230	PRINTS:PR01217	PFscan:PS50053	PFscan:PS50128	PANTHER:PTHR15316
PANTHER:PTHR15316:SF1	InterPro:SF3A1	SMART:SM00213	SMART:SM00648	SUPFAM:SSF109905	SUPFAM:SSF54236
InterPro:SWAP/Surp_sf	InterPro:Surp	UniParc:UPI000233DC8C	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr20:+:36807383..36811672

Molecular Weight (calculated)

87942.8 Da

IEP (calculated)

4.846

GRAVY (calculated)

-0.602

Length

798 amino acids

Sequence
(BLAST)

001: MLGSLPILPL PAPPSDGNLG PLPESQVIEE EQNKSNSASV PAPATVVTHT RTIGIIHPPP DIRTIVDKTS QFVAKNGPEF EKRIIANNTG NVKFNFLNSS
101: DPYHAYYQHR LSEFRAQNQS SGQQPPPQPA DSAVPESAPD SNNGVAAAEK PDVSAQFKPV RKVLDPPEAE QYTVRLPEGI TGEELDIIKL TAQFVARNGK
201: SFLTGLTSRE VNNPQFHFLK PTHSMFTFFT SLADAYSKVL MPPKGLTEKL KKSVSDMTTV LERCVNRLEW ERSQEQARQK AEDEIEQERI QMAMIDWHDF
301: VVVETIDFAD DEDEELPPPM TIEEVIRRSK VTAMEEDIVE PGKEVEMEMD VEEAQLVEEG MRAASLEDRD DGKQNEVRVT EDPEPPMRIV KNWKRPEERI
401: SAERDSTKFV VSPITGELIP ISEMSEHMRI SLIDPKYKEQ KERMFAKIRE TTLAADDEIS RNIVGLARTR PDIFGTTEEE VSNAVKAEIE KINDEQPKQV
501: IWDGHTGSIG RTANQAMSQN IGSEDQNDAS NNEAKNLLGP AAPPPRPGMP SVRPLPLPPG LALNLPRVPV QYSAPHSGAL PMPPPRSMMP SIRPALPPPM
601: PMNTGQQSII AGQPPPMHPS IPMNNHGIPI PPPPGSQFTP VPVPRPYVPL SVPPSVMPMM HPPPLPQGLP PPPPPEEAPP PLPEEPEPKR QKLDDSALIP
701: EDQFLAQHPG PVRISVSVPN VDEGNLKGQV LEITVQSLSE TVGSLKEKIA GEIQLPANKQ KLSGKPGFLK DNMSLAHYNV GGGETLTLTL RERGGRKR

Best Arabidopsis Sequence Match ( AT1G14640.1 )
(BLAST)

001: MFNSMKILPL EAPPADGNLG PLPPSQLTDE EIKENEFQGE QNNSIQTPIA VATHTNPIGI IYPPPEIRKI VETTAQFVSQ NGLAFGNKVK TEKANNANFS
101: FLKSDNPYHG FYRYKVTEYS CHIRDGAQGT DVDDTEDPKL DDESDAKPDL QAQFRAPRKI LEAPEPEKYT VRLPEGIMEA ELDIIKHTAQ FVARNGQSFL
201: RELMRREVNN SQFQFMKPTH SMFTFFTSLV DAYSEVLMPP RDLKEKLRKS VADLTTVLER CLNRLEWDRF QEEEKNKEED EKEKERVQMV MIDWKDFAVV
301: ESIDFADEED KDLPMPMTLE EVIRRSKVSA MEEDEIVEPG KEVEMDMDEE EVKLVAEGMR AANLEEYVGS VEIEEEAPMR IVKNWKRPED RFLTERDSSK
401: VVISRITGEL IPITEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAD IEKKDEQPKQ VIWDGHTGSI
501: GRTANQALTQ NSNGEQGDGV YGDPNSFPGP AAFPPPRPGV PTVRPLPPPQ NLALNLPRPP PSVQYPGAPR PLGVPMMQPM YQQHQLSMSG PHGHPSMMMS
601: RPPQMQPVMR VPPPPGSQFS HMQVPQPYGQ LPPLSMGMMQ PPPMAEMPPP PPPGEAPPPL PEEPEPKRQK LDESALVPED QFLAQHPGPA TIRVSKPNEN
701: DGQVMEITVQ SLSENVGSLK EKIAGEMQIP ANKQK

Arabidopsis Description

SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4HW92]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.