Factsheet for Bra016688.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84020	Canola	nucleus	26.16	84.58
Bra026198.1-P	Field mustard	cytosol, plastid	21.39	80.43
AT1G14650.1	Thale cress	cytosol	84.1	74.14
Solyc04g005690.2.1	Tomato	cytosol, nucleus	68.5	61.72
Solyc02g081960.2.1	Tomato	cytosol, nucleus	67.77	60.99
VIT_01s0011g02040.t01	Wine grape	cytosol	70.38	59.83
PGSC0003DMT400007349	Potato	cytosol	68.93	59.4
GSMUA_Achr3P03970_001	Banana	cytosol	67.2	59.39
KRG90981	Soybean	nucleus	68.21	59.15
KRH12470	Soybean	cytosol, endoplasmic reticulum, nucleus	64.16	59.12
KRH36511	Soybean	cytosol	68.64	58.93
KRH35776	Soybean	cytosol	68.21	58.93
PGSC0003DMT400018892	Potato	cytosol	67.49	58.23
CDY52037	Canola	cytosol	24.86	57.72
TraesCS3B01G212000.1	Wheat	cytosol	47.54	56.92
GSMUA_Achr9P12650_001	Banana	cytosol	65.32	56.01
CDY45276	Canola	cytosol	22.69	54.51
Os02t0245000-01	Rice	cytosol	59.25	51.77
EES00535	Sorghum	cytosol	59.25	51.06
TraesCS3B01G211900.1	Wheat	cytosol	56.36	50.85
TraesCS3A01G503600.1	Wheat	cytosol	58.09	50.82
Zm00001d008293_P001	Maize	cytosol	59.1	50.74
Zm00001d040343_P003	Maize	cytosol	59.1	50.68
TraesCS3D01G510100.1	Wheat	cytosol	58.09	50.63
HORVU3Hr1G110920.1	Barley	cytosol	57.95	48.96
TraesCS3B01G566900.1	Wheat	cytosol	58.24	48.67
Bra000608.1-P	Field mustard	cytosol	4.48	43.66
Bra032181.1-P	Field mustard	cytosol	10.26	32.87
Bra023557.1-P	Field mustard	mitochondrion	10.55	30.67
Bra031050.1-P	Field mustard	cytosol	13.58	23.62
Bra007503.1-P	Field mustard	cytosol	14.02	18.55
KXG32223	Sorghum	nucleus, plastid	3.76	13.61

Protein Annotations

Gene3D:1.10.10.790	MapMan:16.4.1.2.3.1	Gene3D:3.10.20.90	EnsemblPlantsGene:Bra016688	EnsemblPlants:Bra016688.1	EnsemblPlants:Bra016688.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000061
InterPro:IPR000626	InterPro:IPR035967	UniProt:M4DJL0	PFAM:PF00240	PFAM:PF01805	PFAM:PF12230
PFscan:PS50053	PFscan:PS50128	PANTHER:PTHR15316	PANTHER:PTHR15316:SF1	InterPro:SF3A1	SMART:SM00213
SMART:SM00648	SUPFAM:SSF109905	SUPFAM:SSF54236	InterPro:SWAP/Surp_sf	InterPro:Surp	UniParc:UPI0002545C66
InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	SEG:seg	:	:	:

Description

AT1G14650 (E=9e-276) | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein

Coordinates

chrA08:-:19562389..19564548

Molecular Weight (calculated)

77116.9 Da

IEP (calculated)

4.792

GRAVY (calculated)

-0.709

Length

692 amino acids

Sequence
(BLAST)

001: MASNAKNAKF NFLTSSDPYH AFYQHKLAEY RAQDEDGAQG TDIVGADLQL DAGGDEGEAQ HDLQAQFRVP PKPLEPPEPE KYTVRLPEGI TGEELEYIKL
101: TAQFVARNGK SFLTGLQSRE NNNPQFFFMK PTHSMFPLFT ALVDAYFDVL KPPEDLKEKL RKSAADLTTV LERCLHRLEW DRSQEQQRKK EEDEKEQERV
201: QMAMIDWHDF VVVESIDFAD DEDEELPPPM TLEEVIRRSK VSAAMEEDDV VEPGKEAEME MDEEEMKLVA DGMRAANLEE NGGYVKIDNM NEEAPMRIVK
301: NWKRPEDRIP TERDPTKVVI SPITGELIPI NEMSEHMRIS LIDPKFKEQK DRMFAKIRET TLAQDDEIAK NIVGLARLRP DIFGTTEEEV SNAVKAEIEK
401: KKDEQPSQVI WDGHTGSIGR TANQALAQNA NGEEQGNGVY GDPNSFPGPA ALPPPRLGVP VVRPLPPPPN LALNLPRPPP SVQYPGPPRP LGVPMMQGMH
501: PQHQLSMPGK PGHPSMMMMN RPPQMQAGMH VPPPPGSQFA HLQVPRPYGQ LAPPPMGMMQ PPPMHGMPPP PPPGEAPPPL PEEPEPKRQK FDESALIPEE
601: QFFAQHPGSA TIRVSVPSVD DGQVIEITVQ SLSENVGSLK EKIAGETQIP ANKQKLSGKA GFLKDNMSLA HYNVGAGEIL TLSLRERGGR KR

Best Arabidopsis Sequence Match ( AT1G14650.1 )
(BLAST)

001: MFSSMQILPL EAPPTDGKLG PLPPSQLTDQ EVEERELQAE QNNSNLAPPA AVATHTRTIG IIHPPPDIRT IVEKTAQFVS KNGLEFEKRI IVSNEKNAKF
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR

Arabidopsis Description

Probable splicing factor 3A subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.