Factsheet for VIT_01s0011g02040.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90981	Soybean	nucleus	78.99	80.58
Solyc04g005690.2.1	Tomato	cytosol, nucleus	75.55	80.08
KRH35776	Soybean	cytosol	78.13	79.4
Solyc02g081960.2.1	Tomato	cytosol, nucleus	74.45	78.8
KRH12470	Soybean	cytosol, endoplasmic reticulum, nucleus	71.99	78.03
PGSC0003DMT400007349	Potato	cytosol	76.66	77.71
KRH36511	Soybean	cytosol	76.54	77.3
PGSC0003DMT400018892	Potato	cytosol	75.68	76.81
GSMUA_Achr3P03970_001	Banana	cytosol	72.73	75.61
CDY41093	Canola	cytosol	67.57	71.24
GSMUA_Achr9P12650_001	Banana	cytosol	70.15	70.76
Bra016688.1-P	Field mustard	cytosol	59.83	70.38
AT1G14650.1	Thale cress	cytosol	67.44	69.94
CDY52036	Canola	cytosol, plastid	15.97	69.89
CDY45277	Canola	cytosol, plastid	15.85	69.73
Bra026198.1-P	Field mustard	cytosol, plastid	15.6	69.02
CDY52037	Canola	cytosol	24.69	67.45
CDY45276	Canola	cytosol	23.71	67.01
CDX84020	Canola	nucleus	17.57	66.82
CDX84019	Canola	cytosol	15.23	66.31
AT5G06890.1	Thale cress	cytosol	5.28	65.15
AT1G14640.1	Thale cress	cytosol	57.13	63.27
Os02t0245000-01	Rice	cytosol	60.69	62.37
Zm00001d008293_P001	Maize	cytosol	60.93	61.54
EES00535	Sorghum	cytosol	60.69	61.52
TraesCS3B01G212000.1	Wheat	cytosol	43.61	61.42
Zm00001d040343_P003	Maize	cytosol	60.81	61.34
TraesCS3B01G211900.1	Wheat	cytosol	57.0	60.5
TraesCS3A01G503600.1	Wheat	cytosol	58.72	60.43
TraesCS3D01G510100.1	Wheat	cytosol	58.85	60.33
HORVU3Hr1G110920.1	Barley	cytosol	58.35	58.0
TraesCS3B01G566900.1	Wheat	cytosol	58.72	57.73
Bra000608.1-P	Field mustard	cytosol	4.18	47.89
CDY21434	Canola	cytosol	4.18	47.89
CDY62788	Canola	cytosol	6.14	42.37
CDX89545	Canola	cytosol	7.86	38.1
CDX89548	Canola	cytosol	7.74	37.5
CDY71524	Canola	cytosol	13.02	37.46
KXG32223	Sorghum	nucleus, plastid	8.6	36.65
CDX83169	Canola	plasma membrane	4.67	36.19
CDY38929	Canola	cytosol	7.49	36.09
AT5G12280.1	Thale cress	cytosol	18.43	35.8
CDY65449	Canola	cytosol	16.58	34.09
Bra032181.1-P	Field mustard	cytosol	8.85	33.33
Bra023557.1-P	Field mustard	mitochondrion	8.23	28.15
CDY09657	Canola	cytosol, nucleus, plastid	15.48	27.63
AT3G27600.1	Thale cress	cytosol	10.57	27.48
AT3G49130.1	Thale cress	cytosol	10.32	27.36
CDY21696	Canola	cytosol	11.43	27.27
CDY38128	Canola	cytosol	13.02	26.5
CDY09653	Canola	nucleus	15.48	25.77
CDX81896	Canola	cytosol	7.25	25.54
CDY58992	Canola	cytosol	7.25	25.43
CDY69291	Canola	cytosol, golgi	5.16	25.3
Bra031050.1-P	Field mustard	cytosol	12.29	25.13
AT4G16200.1	Thale cress	nucleus	7.86	22.22
CDX71843	Canola	cytosol	5.77	21.56
CDY72308	Canola	cytosol	16.22	20.21
CDY58090	Canola	cytosol	12.65	19.73
Bra007503.1-P	Field mustard	cytosol	12.65	19.69
CDY44531	Canola	cytosol	12.9	18.85
CDY38126	Canola	cytosol	18.06	17.84
CDX71844	Canola	cytosol, golgi, plasma membrane	4.05	16.34
AT5G06520.1	Thale cress	cytosol	13.02	15.61
AT1G18050.1	Thale cress	nucleus	3.19	11.61

Protein Annotations

Gene3D:1.10.10.790	EntrezGene:100242352	wikigene:100242352	MapMan:16.4.1.2.3.1	Gene3D:3.10.20.90	ProteinID:CCB50994
ProteinID:CCB50994.1	ncoils:Coil	UniProt:F6HFR3	EMBL:FN595752	GO:GO:0000381	GO:GO:0000389
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005686	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0071004	GO:GO:0071013
InterPro:IPR000061	InterPro:IPR000626	InterPro:IPR035967	EntrezGene:LOC100242352	wikigene:LOC100242352	PFAM:PF00240
PFAM:PF01805	PFAM:PF12230	PRINTS:PR01217	PFscan:PS50053	PFscan:PS50128	PANTHER:PTHR15316
PANTHER:PTHR15316:SF1	InterPro:SF3A1	SMART:SM00213	SMART:SM00648	SUPFAM:SSF109905	SUPFAM:SSF54236
InterPro:SWAP/Surp_sf	InterPro:Surp	TIGR:TC59993	UniParc:UPI000198296E	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
ArrayExpress:VIT_01s0011g02040	EnsemblPlantsGene:VIT_01s0011g02040	EnsemblPlants:VIT_01s0011g02040.t01	unigene:Vvi.1455	RefSeq:XP_002278479	RefSeq:XP_002278479.1
RefSeq:XP_010648522.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:+:1743085..1745761

Molecular Weight (calculated)

90000.1 Da

IEP (calculated)

4.779

GRAVY (calculated)

-0.643

Length

814 amino acids

Sequence
(BLAST)

001: MLGAFPILPL PAPPSDGNLG PLPLSQLQDQ TTDENVETEE KNKVNSAPAS VATHTRTIGI IHPPPDIRNI VDKTAQFVAK NGPEFEKRII ANNAGNAKFN
101: FLNGSDPYHA YYQHRLSEFR SQNQSSAQQP PSQPADSSAP ESAPSAPHAD NSETVVKPDP SAQFKPVRKV LEPPETEQYT VRLPEGITGE ELDIIKLTAQ
201: FVARNGKSFL TGLTSREINN PQFHFLKPTH SMFMFFTALA DAYSKVLMPP KGLTEKLRKS VTDMTTVLER CLHRLEWERS QEQARQKAED EIEQERMQMA
301: MIDWHDFVVV ETIDFADDED EDLPPPMTLD EVIRRSKISA AEEEEFIEPG KEVEMEMDEE EVQLVEEGMR AASLEENDDE RKEAKTTEEQ EPPMRIVKNW
401: KRPEDRIPAE RDPTKFGVSP ITGELIPINE MSEHMRISLI DPKYKEQKER MFAKIRETTL AQDDEISRNI VGLARTRPDI FGTTEEEVSN AVKAEIEKKK
501: EDQPKQVIWD GHTGSIGRTA NQAMTQNLNG EDLNDAANND ARTLPGPAAP PPPRPGVPSV RPLPPPPGLA LNLPRVPPNT VQYSAPTNSG LLAPPPPRPP
601: IVSMIPSIRP APPPMSLTSG QQPLMLNRPP LPMPPSISVN APNIPVPPPP GSQFMPMPVP RSFVPLPVPP PAMHMIQPPP LPQGVPPPPP PEEAPPPLPE
701: EPEPKRQRLD DSLLIPEDQF LAQHPGPVRI TVSVPNVDEG NLKGQLLEIT VQSLSETVGS LKEKIAGEVQ LPANKQKLSG KAGFLKDNLS LAYYNVAAGE
801: PLALSLRERG GRKR

Best Arabidopsis Sequence Match ( AT1G14650.1 )
(BLAST)

001: MFSSMQILPL EAPPTDGKLG PLPPSQLTDQ EVEERELQAE QNNSNLAPPA AVATHTRTIG IIHPPPDIRT IVEKTAQFVS KNGLEFEKRI IVSNEKNAKF
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR

Arabidopsis Description

Probable splicing factor 3A subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.