Factsheet for Solyc04g005690.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007349	Potato	cytosol	98.18	93.9
Solyc02g081960.2.1	Tomato	cytosol, nucleus	91.54	91.42
VIT_01s0011g02040.t01	Wine grape	cytosol	80.08	75.55
KRH35776	Soybean	cytosol	76.04	72.91
KRH12470	Soybean	cytosol, endoplasmic reticulum, nucleus	70.96	72.57
KRG90981	Soybean	nucleus	75.39	72.56
KRH36511	Soybean	cytosol	75.91	72.33
Bra016688.1-P	Field mustard	cytosol	61.72	68.5
GSMUA_Achr3P03970_001	Banana	cytosol	69.79	68.45
CDX84020	Canola	nucleus	18.75	67.29
CDY41093	Canola	cytosol	67.45	67.1
CDY45277	Canola	cytosol, plastid	16.02	66.49
AT1G14650.1	Thale cress	cytosol	67.84	66.37
Bra026198.1-P	Field mustard	cytosol, plastid	15.89	66.3
GSMUA_Achr9P12650_001	Banana	cytosol	69.53	66.17
CDY52036	Canola	cytosol, plastid	15.89	65.59
CDX84019	Canola	cytosol	15.23	62.57
TraesCS3B01G212000.1	Wheat	cytosol	46.22	61.42
AT5G06890.1	Thale cress	cytosol	5.21	60.61
AT1G14640.1	Thale cress	cytosol	57.55	60.14
Os02t0245000-01	Rice	cytosol	61.59	59.72
CDY45276	Canola	cytosol	22.4	59.72
CDY52037	Canola	cytosol	23.05	59.4
EES00535	Sorghum	cytosol	61.72	59.03
TraesCS3D01G510100.1	Wheat	cytosol	60.94	58.94
TraesCS3B01G211900.1	Wheat	cytosol	58.72	58.8
Zm00001d008293_P001	Maize	cytosol	61.59	58.68
TraesCS3A01G503600.1	Wheat	cytosol	60.42	58.66
Zm00001d040343_P003	Maize	cytosol	61.2	58.24
HORVU3Hr1G110920.1	Barley	cytosol	60.68	56.9
TraesCS3B01G566900.1	Wheat	cytosol	60.94	56.52
Bra000608.1-P	Field mustard	cytosol	4.3	46.48
CDY21434	Canola	cytosol	4.3	46.48
CDY62788	Canola	cytosol	6.25	40.68
CDY71524	Canola	cytosol	13.8	37.46
CDX89545	Canola	cytosol	8.07	36.9
CDX89548	Canola	cytosol	7.94	36.31
CDY38929	Canola	cytosol	7.94	36.09
CDX83169	Canola	plasma membrane	4.69	34.29
AT5G12280.1	Thale cress	cytosol	18.62	34.13
Bra032181.1-P	Field mustard	cytosol	9.51	33.8
CDY65449	Canola	cytosol	17.19	33.33
KXG32223	Sorghum	nucleus, plastid	8.07	32.46
Bra023557.1-P	Field mustard	mitochondrion	8.85	28.57
AT3G49130.1	Thale cress	cytosol	11.2	28.01
AT3G27600.1	Thale cress	cytosol	11.33	27.8
CDY09657	Canola	cytosol, nucleus, plastid	16.15	27.19
CDY21696	Canola	cytosol	11.98	26.98
CDY38128	Canola	cytosol	13.54	26.0
CDX81896	Canola	cytosol	7.68	25.54
CDY58992	Canola	cytosol	7.68	25.43
CDY69291	Canola	cytosol, golgi	5.47	25.3
CDY09653	Canola	nucleus	16.02	25.15
Bra031050.1-P	Field mustard	cytosol	12.63	24.37
AT4G16200.1	Thale cress	nucleus	7.94	21.18
CDX71843	Canola	cytosol	5.6	19.72
CDY58090	Canola	cytosol	12.89	18.97
Bra007503.1-P	Field mustard	cytosol	12.89	18.93
CDY72308	Canola	cytosol	15.89	18.68
CDY44531	Canola	cytosol	12.76	17.59
CDY38126	Canola	cytosol	18.75	17.48
AT5G06520.1	Thale cress	cytosol	14.06	15.91
CDX71844	Canola	cytosol, golgi, plasma membrane	3.78	14.36
AT1G18050.1	Thale cress	nucleus	3.39	11.61

Protein Annotations

Gene3D:1.10.10.790	MapMan:16.4.1.2.3.1	Gene3D:3.10.20.90	ncoils:Coil	GO:GO:0000381	GO:GO:0000389
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005686	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0071004	GO:GO:0071013
InterPro:IPR000061	InterPro:IPR000626	InterPro:IPR035967	UniProt:K4BNH5	PFAM:PF00240	PFAM:PF01805
PFAM:PF12230	PRINTS:PR01217	PFscan:PS50053	PFscan:PS50128	PANTHER:PTHR15316	PANTHER:PTHR15316:SF1
InterPro:SF3A1	SMART:SM00213	SMART:SM00648	SUPFAM:SSF109905	SUPFAM:SSF54236	InterPro:SWAP/Surp_sf
EnsemblPlantsGene:Solyc04g005690.2	EnsemblPlants:Solyc04g005690.2.1	InterPro:Surp	UniParc:UPI00027663F5	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:451734..456916

Molecular Weight (calculated)

85420.6 Da

IEP (calculated)

4.714

GRAVY (calculated)

-0.731

Length

768 amino acids

Sequence
(BLAST)

001: MEENEEDNNK GNKVPTSVAT HTRTIGIIYP PPDIRSIVDK TSQFVAKNGP EFEKRIVLNN AGNAKFNFLN ASDPYHAYYQ HRLADARAQN QASGEQPTQP
101: DDNEAAPAPP TADGAEATAK PDPSAQFRPV RKVLEPPEAE QYTVRLPEGI TGEELDIIKL TAQFVARNGK SFLTGLTSRE INNPQFHFLK PTHSMFMFFT
201: SLADAYSKVL MPPKGLTDKL QKSAADMTTV LERCLHRLEW ERSQEQARQK AEDEIEQERV QMAMIDWHDF VVVETIDFAD DEDQDLPPPM TLEEVIRRSK
301: MPTLEEEEYV EPGKEVEMEM DEEEVQLVEE GMRAATLEEN GDIKSAETMT ISEEQDPPMR IVKNWKRPEE RILAERDPTK YVVSPITGEL IPINEMSEHM
401: RISLIDPKYK EQKDRMFAKI KETTLAQDDE ISRNIVGLAR TRPDIFGTTE EEVSNAVKAE IEKKKEEPKQ VIWDGHTGSI GRTANQAMSQ NSDDQNDAAN
501: DARNLPGPQA PPPPRPGFPS IRPLPPPPGL ALNIPRPPNT VQYSTPGVAA PPPPRPPMVN MIPQVRPPPP PMPQMPGQQN LMVNRPPMPP SMGMNSLNLP
601: IPPPPGSQFT PLGAPRPFVP HPMSQPGMSM VPPPPMPQGM PPPPPPEEAP PLPEEPEPKR QKLEESILIP EDQFLAQHSG PARINISVPN TDEGNLKGQI
701: LEITVQSLSE TIASLKEKIS GEIQLPANKQ KLSGKAGFLK DNLSLAYYNV ASGETLGLSL RERGGRKR

Best Arabidopsis Sequence Match ( AT1G14650.1 )
(BLAST)

001: MFSSMQILPL EAPPTDGKLG PLPPSQLTDQ EVEERELQAE QNNSNLAPPA AVATHTRTIG IIHPPPDIRT IVEKTAQFVS KNGLEFEKRI IVSNEKNAKF
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR

Arabidopsis Description

Probable splicing factor 3A subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.