Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89545 | Canola | cytosol | 30.51 | 21.43 |
| CDX89548 | Canola | cytosol | 30.51 | 21.43 |
| CDY38929 | Canola | cytosol | 28.81 | 20.12 |
| CDY52037 | Canola | cytosol | 40.68 | 16.11 |
| CDX84020 | Canola | nucleus | 25.42 | 14.02 |
| KXG32223 | Sorghum | nucleus, plastid | 22.03 | 13.61 |
| CDY45276 | Canola | cytosol | 26.27 | 10.76 |
| CDY21696 | Canola | cytosol | 27.12 | 9.38 |
| CDY65449 | Canola | cytosol | 29.66 | 8.84 |
| AT1G14650.1 | Thale cress | cytosol | 49.15 | 7.39 |
| CDY41093 | Canola | cytosol | 46.61 | 7.12 |
| CDY45277 | Canola | cytosol, plastid | 10.17 | 6.49 |
| KRH12470 | Soybean | cytosol, endoplasmic reticulum, nucleus | 40.68 | 6.39 |
| CDY09657 | Canola | cytosol, nucleus, plastid | 24.58 | 6.36 |
| Solyc04g005690.2.1 | Tomato | cytosol, nucleus | 40.68 | 6.25 |
| VIT_01s0011g02040.t01 | Wine grape | cytosol | 42.37 | 6.14 |
| KRH35776 | Soybean | cytosol | 41.53 | 6.12 |
| Solyc02g081960.2.1 | Tomato | cytosol, nucleus | 39.83 | 6.11 |
| KRH36511 | Soybean | cytosol | 41.53 | 6.08 |
| KRG90981 | Soybean | nucleus | 40.68 | 6.02 |
| PGSC0003DMT400018892 | Potato | cytosol | 40.68 | 5.99 |
| PGSC0003DMT400007349 | Potato | cytosol | 40.68 | 5.98 |
| GSMUA_Achr3P03970_001 | Banana | cytosol | 38.98 | 5.87 |
| Os02t0245000-01 | Rice | cytosol | 38.98 | 5.81 |
| CDY09653 | Canola | nucleus | 23.73 | 5.73 |
| Zm00001d040343_P003 | Maize | cytosol | 38.98 | 5.7 |
| EES00535 | Sorghum | cytosol | 38.14 | 5.6 |
| Zm00001d008293_P001 | Maize | cytosol | 38.14 | 5.58 |
| TraesCS3A01G503600.1 | Wheat | cytosol | 37.29 | 5.56 |
| TraesCS3D01G510100.1 | Wheat | cytosol | 37.29 | 5.54 |
| TraesCS3B01G211900.1 | Wheat | cytosol | 35.59 | 5.48 |
| GSMUA_Achr9P12650_001 | Banana | cytosol | 37.29 | 5.45 |
| CDY52036 | Canola | cytosol, plastid | 8.47 | 5.38 |
| HORVU3Hr1G110920.1 | Barley | cytosol | 37.29 | 5.37 |
| TraesCS3B01G566900.1 | Wheat | cytosol | 37.29 | 5.31 |
| CDX81896 | Canola | cytosol | 10.17 | 5.19 |
| CDY58992 | Canola | cytosol | 10.17 | 5.17 |
| CDY38126 | Canola | cytosol | 34.75 | 4.98 |
| CDX84019 | Canola | cytosol | 6.78 | 4.28 |
| CDY21434 | Canola | cytosol | 2.54 | 4.23 |
| CDY69291 | Canola | cytosol, golgi | 5.93 | 4.22 |
| CDX71844 | Canola | cytosol, golgi, plasma membrane | 6.78 | 3.96 |
| CDY72308 | Canola | cytosol | 21.19 | 3.83 |
| CDX83169 | Canola | plasma membrane | 3.39 | 3.81 |
| CDY44531 | Canola | cytosol | 17.8 | 3.77 |
| CDY58090 | Canola | cytosol | 15.25 | 3.45 |
| CDY38128 | Canola | cytosol | 10.17 | 3.0 |
| CDY71524 | Canola | cytosol | 6.78 | 2.83 |
| TraesCS3B01G212000.1 | Wheat | cytosol | 13.56 | 2.77 |
| CDX71843 | Canola | cytosol | 3.39 | 1.83 |
Protein Annotations
| Gene3D:1.10.10.790 | MapMan:35.1 | GO:A0A078JD58 | UniProt:A0A078JD58 | EnsemblPlants:CDY62788 | ProteinID:CDY62788 |
| ProteinID:CDY62788.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00037598001 | InterPro:IPR000061 |
| InterPro:IPR035967 | PFAM:PF01805 | PFscan:PS50128 | PANTHER:PTHR15316 | SMART:SM00648 | SUPFAM:SSF109905 |
| InterPro:SWAP/Surp_sf | InterPro:Surp | UniParc:UPI0004EE1706 | : | : | : |
Description
BnaCnng40980DBnaCnng40980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JD58]
Coordinates
chrLK034192:-:6335..6801
Molecular Weight (calculated)
13393.7 Da
IEP (calculated)
6.098
GRAVY (calculated)
-0.917
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSATKNDVA HAAIIEPPPD VRRMLQKTAR LVSERGLKME SRVMDSNKND ERFNFLKSSD PYHAFYKHKL TQYRNNPEDG VQEILNPDAP PPATSPQFME
101: PLPHPFGPPE FSDDQSSL
101: PLPHPFGPPE FSDDQSSL
001: MFSSMQILPL EAPPTDGKLG PLPPSQLTDQ EVEERELQAE QNNSNLAPPA AVATHTRTIG IIHPPPDIRT IVEKTAQFVS KNGLEFEKRI IVSNEKNAKF
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR
Arabidopsis Description
Probable splicing factor 3A subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXF1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.