Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G510100.1 | Wheat | cytosol | 88.89 | 92.7 |
| TraesCS3A01G503600.1 | Wheat | cytosol | 88.04 | 92.16 |
| HORVU3Hr1G110920.1 | Barley | cytosol | 85.14 | 86.08 |
| TraesCS3B01G212000.1 | Wheat | cytosol | 58.57 | 83.91 |
| TraesCS3B01G211900.1 | Wheat | cytosol | 75.36 | 81.36 |
| Os02t0245000-01 | Rice | cytosol | 74.03 | 77.4 |
| EES00535 | Sorghum | cytosol | 73.91 | 76.21 |
| Zm00001d040343_P003 | Maize | cytosol | 73.79 | 75.71 |
| Zm00001d008293_P001 | Maize | cytosol | 73.67 | 75.68 |
| GSMUA_Achr9P12650_001 | Banana | cytosol | 59.78 | 61.34 |
| GSMUA_Achr3P03970_001 | Banana | cytosol | 57.97 | 61.3 |
| Solyc04g005690.2.1 | Tomato | cytosol, nucleus | 56.52 | 60.94 |
| Solyc02g081960.2.1 | Tomato | cytosol, nucleus | 56.28 | 60.6 |
| KRH12470 | Soybean | cytosol, endoplasmic reticulum, nucleus | 54.59 | 60.19 |
| KRH36511 | Soybean | cytosol | 57.97 | 59.55 |
| KRG90981 | Soybean | nucleus | 57.37 | 59.52 |
| KRH35776 | Soybean | cytosol | 57.37 | 59.3 |
| PGSC0003DMT400007349 | Potato | cytosol | 57.49 | 59.28 |
| VIT_01s0011g02040.t01 | Wine grape | cytosol | 57.73 | 58.72 |
| PGSC0003DMT400018892 | Potato | cytosol | 56.64 | 58.48 |
| Bra016688.1-P | Field mustard | cytosol | 48.67 | 58.24 |
| CDY41093 | Canola | cytosol | 53.86 | 57.77 |
| Bra026198.1-P | Field mustard | cytosol, plastid | 12.8 | 57.61 |
| CDY52036 | Canola | cytosol, plastid | 12.68 | 56.45 |
| CDY45277 | Canola | cytosol, plastid | 12.56 | 56.22 |
| AT1G14650.1 | Thale cress | cytosol | 52.78 | 55.67 |
| CDX84020 | Canola | nucleus | 14.25 | 55.14 |
| CDX84019 | Canola | cytosol | 12.2 | 54.01 |
| AT5G06890.1 | Thale cress | cytosol | 4.11 | 51.52 |
| AT1G14640.1 | Thale cress | cytosol | 45.17 | 50.88 |
| CDY52037 | Canola | cytosol | 18.0 | 50.0 |
| CDY45276 | Canola | cytosol | 17.03 | 48.96 |
| KXG32223 | Sorghum | nucleus, plastid | 9.9 | 42.93 |
| CDY21434 | Canola | cytosol | 3.38 | 39.44 |
| Bra000608.1-P | Field mustard | cytosol | 3.38 | 39.44 |
| CDX89548 | Canola | cytosol | 7.61 | 37.5 |
| CDY62788 | Canola | cytosol | 5.31 | 37.29 |
| CDX89545 | Canola | cytosol | 7.49 | 36.9 |
| CDY38929 | Canola | cytosol | 7.49 | 36.69 |
| CDY71524 | Canola | cytosol | 11.11 | 32.51 |
| Bra032181.1-P | Field mustard | cytosol | 8.33 | 31.94 |
| CDX83169 | Canola | plasma membrane | 3.99 | 31.43 |
| AT5G12280.1 | Thale cress | cytosol | 15.1 | 29.83 |
| CDY65449 | Canola | cytosol | 14.13 | 29.55 |
| CDY21696 | Canola | cytosol | 11.11 | 26.98 |
| CDY09657 | Canola | cytosol, nucleus, plastid | 13.77 | 25.0 |
| Bra031050.1-P | Field mustard | cytosol | 11.71 | 24.37 |
| Bra023557.1-P | Field mustard | mitochondrion | 7.0 | 24.37 |
| AT3G49130.1 | Thale cress | cytosol | 8.82 | 23.78 |
| CDY09653 | Canola | nucleus | 13.89 | 23.52 |
| AT3G27600.1 | Thale cress | cytosol | 8.82 | 23.32 |
| CDY38128 | Canola | cytosol | 10.27 | 21.25 |
| CDY69291 | Canola | cytosol, golgi | 4.23 | 21.08 |
| CDX81896 | Canola | cytosol | 5.56 | 19.91 |
| CDY58992 | Canola | cytosol | 5.56 | 19.83 |
| AT4G16200.1 | Thale cress | nucleus | 6.64 | 19.1 |
| CDY72308 | Canola | cytosol | 14.86 | 18.84 |
| CDX71843 | Canola | cytosol | 4.83 | 18.35 |
| CDY58090 | Canola | cytosol | 10.99 | 17.43 |
| Bra007503.1-P | Field mustard | cytosol | 10.87 | 17.21 |
| CDY44531 | Canola | cytosol | 11.11 | 16.52 |
| CDY38126 | Canola | cytosol | 15.22 | 15.29 |
| AT5G06520.1 | Thale cress | cytosol | 12.2 | 14.87 |
| CDX71844 | Canola | cytosol, golgi, plasma membrane | 3.5 | 14.36 |
| AT1G18050.1 | Thale cress | nucleus | 2.78 | 10.27 |
Protein Annotations
| Gene3D:1.10.10.790 | MapMan:16.4.1.2.3.1 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | InterPro:IPR000061 | InterPro:IPR000626 | InterPro:IPR035967 | PFAM:PF00240 | PFAM:PF01805 |
| PFAM:PF12230 | PFscan:PS50053 | PFscan:PS50128 | PANTHER:PTHR15316 | PANTHER:PTHR15316:SF1 | InterPro:SF3A1 |
| SMART:SM00213 | SMART:SM00648 | SUPFAM:SSF109905 | SUPFAM:SSF54236 | InterPro:SWAP/Surp_sf | InterPro:Surp |
| EnsemblPlantsGene:TraesCS3B01G566900 | EnsemblPlants:TraesCS3B01G566900.1 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | SEG:seg | : |
Description
No Description!
Coordinates
chr3B:-:798549475..798552055
Molecular Weight (calculated)
84983.4 Da
IEP (calculated)
4.866
GRAVY (calculated)
-0.551
Length
828 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTPTVAPAP LLAAPDGGEX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXAAPAA SAPSKPPEPA PTVATHTRTI
101: GIIHPPPDIR VIIEKTATFV AKNGPEFERR IVAHNQGNAK FNFLQPSDPY HAYYQHRVSE IADAPPAPDS AAAADPDALP SDDSAAPADD HSAPFRVGPP
201: AKVLVPPKAE LYTVRLPEGI TTEEVDIVKL TAQFVARNGK TFLASLASRE STNPQFNFLR PTHSMFPFFT ALADIYSRVM RPDEGVAALM RELKEGTKDL
301: TTVLERCLNR LEWDRSQEQA KQQAEDEVEM ERMQMSMIDW HDFVVVETIE FADDEFEGLP VPPTLEELKR RKRMETLGEE EPMELAEPAK DVEMDMDEEE
401: MQLVEEGMKA ARLDENDGGA QVKVAGNDDE PPMRIVKNYK RPEERIPAER DPTKVVVSPI TGELIPISEM EEHMRISLID PKYKEQKERM LAKIKETTLA
501: PDDEISRNII GLARTRPDIF GTTEEEVSNA VKAEIEKKKD EQPNQVIWDG HSGSIGWTAT QAMSVGGEEQ GDASNAPGPA PLPRPGMSLP RPPQPLSLVN
601: VPRFTPNPMP YHVQPPHHMQ GVPPHMMPNM HQPLPPGQQH MIRMSGPMGH MPSNIPPPPP GHNTQFMPGP PRFAMPPPPH MQNMPAMVNP IGIPQPPPPL
701: PPQPPAEEQP PLPEEPEPKR QRTDDASLIP AEQFLAQHPG PARISVSVPN LDEGNLRGQV LEISVQSLSD TVGSLKEQIA GELQLPANKQ KLSVRTSFLK
801: DNLSLAYYNV GPGVVINLAL RERGGRKK
101: GIIHPPPDIR VIIEKTATFV AKNGPEFERR IVAHNQGNAK FNFLQPSDPY HAYYQHRVSE IADAPPAPDS AAAADPDALP SDDSAAPADD HSAPFRVGPP
201: AKVLVPPKAE LYTVRLPEGI TTEEVDIVKL TAQFVARNGK TFLASLASRE STNPQFNFLR PTHSMFPFFT ALADIYSRVM RPDEGVAALM RELKEGTKDL
301: TTVLERCLNR LEWDRSQEQA KQQAEDEVEM ERMQMSMIDW HDFVVVETIE FADDEFEGLP VPPTLEELKR RKRMETLGEE EPMELAEPAK DVEMDMDEEE
401: MQLVEEGMKA ARLDENDGGA QVKVAGNDDE PPMRIVKNYK RPEERIPAER DPTKVVVSPI TGELIPISEM EEHMRISLID PKYKEQKERM LAKIKETTLA
501: PDDEISRNII GLARTRPDIF GTTEEEVSNA VKAEIEKKKD EQPNQVIWDG HSGSIGWTAT QAMSVGGEEQ GDASNAPGPA PLPRPGMSLP RPPQPLSLVN
601: VPRFTPNPMP YHVQPPHHMQ GVPPHMMPNM HQPLPPGQQH MIRMSGPMGH MPSNIPPPPP GHNTQFMPGP PRFAMPPPPH MQNMPAMVNP IGIPQPPPPL
701: PPQPPAEEQP PLPEEPEPKR QRTDDASLIP AEQFLAQHPG PARISVSVPN LDEGNLRGQV LEISVQSLSD TVGSLKEQIA GELQLPANKQ KLSVRTSFLK
801: DNLSLAYYNV GPGVVINLAL RERGGRKK
001: MFSSMQILPL EAPPTDGKLG PLPPSQLTDQ EVEERELQAE QNNSNLAPPA AVATHTRTIG IIHPPPDIRT IVEKTAQFVS KNGLEFEKRI IVSNEKNAKF
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR
Arabidopsis Description
Probable splicing factor 3A subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXF1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.