Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G14650.1 | Thale cress | cytosol | 77.42 | 72.48 |
| KRH12470 | Soybean | cytosol, endoplasmic reticulum, nucleus | 59.18 | 57.92 |
| PGSC0003DMT400007349 | Potato | cytosol | 62.99 | 57.66 |
| Solyc04g005690.2.1 | Tomato | cytosol, nucleus | 60.14 | 57.55 |
| VIT_01s0011g02040.t01 | Wine grape | cytosol | 63.27 | 57.13 |
| PGSC0003DMT400018892 | Potato | cytosol | 62.18 | 56.98 |
| Solyc02g081960.2.1 | Tomato | cytosol, nucleus | 59.59 | 56.96 |
| KRH36511 | Soybean | cytosol | 62.45 | 56.95 |
| KRH35776 | Soybean | cytosol | 62.04 | 56.93 |
| KRG90981 | Soybean | nucleus | 61.09 | 56.27 |
| GSMUA_Achr3P03970_001 | Banana | cytosol | 58.37 | 54.79 |
| GSMUA_Achr9P12650_001 | Banana | cytosol | 56.73 | 51.67 |
| TraesCS3B01G212000.1 | Wheat | cytosol | 38.78 | 49.31 |
| Os02t0245000-01 | Rice | cytosol | 52.52 | 48.74 |
| EES00535 | Sorghum | cytosol | 52.24 | 47.82 |
| TraesCS3B01G211900.1 | Wheat | cytosol | 49.52 | 47.46 |
| Zm00001d040343_P003 | Maize | cytosol | 51.84 | 47.21 |
| Zm00001d008293_P001 | Maize | cytosol | 51.7 | 47.15 |
| TraesCS3A01G503600.1 | Wheat | cytosol | 50.61 | 47.03 |
| TraesCS3D01G510100.1 | Wheat | cytosol | 50.34 | 46.6 |
| TraesCS3B01G566900.1 | Wheat | cytosol | 50.88 | 45.17 |
| HORVU3Hr1G110920.1 | Barley | cytosol | 50.2 | 45.05 |
| AT5G06890.1 | Thale cress | cytosol | 3.81 | 42.42 |
| AT5G12280.1 | Thale cress | cytosol | 16.6 | 29.12 |
| AT3G49130.1 | Thale cress | cytosol | 11.29 | 27.04 |
| KXG32223 | Sorghum | nucleus, plastid | 6.39 | 24.61 |
| AT3G27600.1 | Thale cress | cytosol | 10.2 | 23.96 |
| AT5G06520.1 | Thale cress | cytosol | 16.19 | 17.53 |
| AT4G16200.1 | Thale cress | nucleus | 6.26 | 15.97 |
| AT1G18050.1 | Thale cress | nucleus | 3.4 | 11.16 |
Protein Annotations
| Gene3D:1.10.10.790 | MapMan:16.4.1.2.3.1 | Gene3D:3.10.20.90 | EntrezGene:838026 | UniProt:A0A178WMB6 | ProteinID:AEE29194.1 |
| ProteinID:ANM59182.1 | ArrayExpress:AT1G14640 | EnsemblPlantsGene:AT1G14640 | RefSeq:AT1G14640 | TAIR:AT1G14640 | RefSeq:AT1G14640-TAIR-G |
| EnsemblPlants:AT1G14640.1 | TAIR:AT1G14640.1 | Unigene:At.51611 | ncoils:Coil | UniProt:F4HW92 | GO:GO:0000381 |
| GO:GO:0000389 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005686 | GO:GO:0006139 | GO:GO:0006396 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0071004 | GO:GO:0071013 |
| InterPro:IPR000061 | InterPro:IPR035967 | RefSeq:NP_001319004.1 | RefSeq:NP_172916.1 | ProteinID:OAP19419.1 | PFAM:PF01805 |
| PFAM:PF12230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001078 | PO:PO:0007616 |
| PO:PO:0009010 | PO:PO:0009046 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50128 | PANTHER:PTHR15316 |
| PANTHER:PTHR15316:SF1 | InterPro:SF3A1 | SMART:SM00648 | SUPFAM:SSF109905 | SUPFAM:SSF54236 | InterPro:SWAP/Surp_sf |
| InterPro:Surp | UniParc:UPI0000162D7C | InterPro:Ubiquitin-like_domsf | SEG:seg | : | : |
Description
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4HW92]
Coordinates
chr1:+:5023426..5025955
Molecular Weight (calculated)
82819.7 Da
IEP (calculated)
4.598
GRAVY (calculated)
-0.717
Length
735 amino acids
Sequence
(BLAST)
(BLAST)
001: MFNSMKILPL EAPPADGNLG PLPPSQLTDE EIKENEFQGE QNNSIQTPIA VATHTNPIGI IYPPPEIRKI VETTAQFVSQ NGLAFGNKVK TEKANNANFS
101: FLKSDNPYHG FYRYKVTEYS CHIRDGAQGT DVDDTEDPKL DDESDAKPDL QAQFRAPRKI LEAPEPEKYT VRLPEGIMEA ELDIIKHTAQ FVARNGQSFL
201: RELMRREVNN SQFQFMKPTH SMFTFFTSLV DAYSEVLMPP RDLKEKLRKS VADLTTVLER CLNRLEWDRF QEEEKNKEED EKEKERVQMV MIDWKDFAVV
301: ESIDFADEED KDLPMPMTLE EVIRRSKVSA MEEDEIVEPG KEVEMDMDEE EVKLVAEGMR AANLEEYVGS VEIEEEAPMR IVKNWKRPED RFLTERDSSK
401: VVISRITGEL IPITEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAD IEKKDEQPKQ VIWDGHTGSI
501: GRTANQALTQ NSNGEQGDGV YGDPNSFPGP AAFPPPRPGV PTVRPLPPPQ NLALNLPRPP PSVQYPGAPR PLGVPMMQPM YQQHQLSMSG PHGHPSMMMS
601: RPPQMQPVMR VPPPPGSQFS HMQVPQPYGQ LPPLSMGMMQ PPPMAEMPPP PPPGEAPPPL PEEPEPKRQK LDESALVPED QFLAQHPGPA TIRVSKPNEN
701: DGQVMEITVQ SLSENVGSLK EKIAGEMQIP ANKQK
101: FLKSDNPYHG FYRYKVTEYS CHIRDGAQGT DVDDTEDPKL DDESDAKPDL QAQFRAPRKI LEAPEPEKYT VRLPEGIMEA ELDIIKHTAQ FVARNGQSFL
201: RELMRREVNN SQFQFMKPTH SMFTFFTSLV DAYSEVLMPP RDLKEKLRKS VADLTTVLER CLNRLEWDRF QEEEKNKEED EKEKERVQMV MIDWKDFAVV
301: ESIDFADEED KDLPMPMTLE EVIRRSKVSA MEEDEIVEPG KEVEMDMDEE EVKLVAEGMR AANLEEYVGS VEIEEEAPMR IVKNWKRPED RFLTERDSSK
401: VVISRITGEL IPITEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAD IEKKDEQPKQ VIWDGHTGSI
501: GRTANQALTQ NSNGEQGDGV YGDPNSFPGP AAFPPPRPGV PTVRPLPPPQ NLALNLPRPP PSVQYPGAPR PLGVPMMQPM YQQHQLSMSG PHGHPSMMMS
601: RPPQMQPVMR VPPPPGSQFS HMQVPQPYGQ LPPLSMGMMQ PPPMAEMPPP PPPGEAPPPL PEEPEPKRQK LDESALVPED QFLAQHPGPA TIRVSKPNEN
701: DGQVMEITVQ SLSENVGSLK EKIAGEMQIP ANKQK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.