Factsheet for AT3G49130.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69291	Canola	cytosol, golgi	12.38	22.89
CDX71843	Canola	cytosol	12.7	17.89
AT5G12280.1	Thale cress	cytosol	17.26	12.65
AT1G14650.1	Thale cress	cytosol	30.29	11.85
KRH12470	Soybean	cytosol, endoplasmic reticulum, nucleus	28.66	11.72
AT1G14640.1	Thale cress	cytosol	27.04	11.29
Solyc04g005690.2.1	Tomato	cytosol, nucleus	28.01	11.2
Solyc02g081960.2.1	Tomato	cytosol, nucleus	28.01	11.18
KRH35776	Soybean	cytosol	28.99	11.11
KRH36511	Soybean	cytosol	28.99	11.04
KRG90981	Soybean	nucleus	28.34	10.9
PGSC0003DMT400007349	Potato	cytosol	28.34	10.83
PGSC0003DMT400018892	Potato	cytosol	28.01	10.72
GSMUA_Achr9P12650_001	Banana	cytosol	28.01	10.66
GSMUA_Achr3P03970_001	Banana	cytosol	26.38	10.34
VIT_01s0011g02040.t01	Wine grape	cytosol	27.36	10.32
TraesCS3B01G212000.1	Wheat	cytosol	19.22	10.21
TraesCS3B01G211900.1	Wheat	cytosol	23.78	9.52
Os02t0245000-01	Rice	cytosol	24.1	9.34
Zm00001d008293_P001	Maize	cytosol	24.43	9.31
Zm00001d040343_P003	Maize	cytosol	24.43	9.29
TraesCS3A01G503600.1	Wheat	cytosol	23.78	9.23
TraesCS3D01G510100.1	Wheat	cytosol	23.78	9.19
EES00535	Sorghum	cytosol	23.78	9.09
TraesCS3B01G566900.1	Wheat	cytosol	23.78	8.82
HORVU3Hr1G110920.1	Barley	cytosol	23.13	8.67
AT5G06520.1	Thale cress	cytosol	18.24	8.25
AT3G27600.1	Thale cress	cytosol	8.14	7.99
AT1G18050.1	Thale cress	nucleus	4.23	5.8
KXG32223	Sorghum	nucleus, plastid	3.26	5.24
AT4G16200.1	Thale cress	nucleus	3.91	4.17
AT5G06890.1	Thale cress	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.10.790	MapMan:35.2	EntrezGene:824074	ProteinID:AEE78502.1	ArrayExpress:AT3G49130	EnsemblPlantsGene:AT3G49130
RefSeq:AT3G49130	TAIR:AT3G49130	RefSeq:AT3G49130-TAIR-G	EnsemblPlants:AT3G49130.1	TAIR:AT3G49130.1	ProteinID:CAB61997.1
GO:GO:0000381	GO:GO:0000389	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005686	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0071004
GO:GO:0071013	InterPro:IPR000061	InterPro:IPR035967	RefSeq:NP_190482.1	PFAM:PF01805	PO:PO:0007616
PO:PO:0009029	PFscan:PS50128	PANTHER:PTHR15316	PANTHER:PTHR15316:SF1	UniProt:Q9SMU9	SMART:SM00648
SUPFAM:SSF109905	InterPro:SWAP/Surp_sf	InterPro:Surp	UniParc:UPI00000AAA29	:	:

Description

SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9SMU9]

Coordinates

chr3:+:18210453..18211708

Molecular Weight (calculated)

34864.3 Da

IEP (calculated)

9.013

GRAVY (calculated)

-0.285

Length

307 amino acids

Sequence
(BLAST)

001: MVDLFDFVGG GNYSAAMPPP ERLSVMIMNR VAQTQPDMVL QLPLGSQLTI PAKGITLKEL GVMKLTAQSS VRYGFDFWCG LWKRVYMNPL FQFLNPSDSR
101: SDFYNGFTAA YSRVLKPSKK LKKFDACTAT VLEGFFHRLH LFKLEEGVET AMIDLHGFVY GVDCFAHMAD DNYSAIMDPP ERPSMMINQL TQIQRNAPAP
201: HEKCLKRSYN FPYAFGGGIS LKELDLMKKV VMKPQFKFME PTNSVFGLYN VVVDAYSRVV KPSDDAYASM GMMQTARPEE PEAKRQKFDE SALNPEGAVR
301: RRHSRWQ

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.