Factsheet for GSMUA_Achr3P03970_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P12650_001	Banana	cytosol	80.97	78.56
VIT_01s0011g02040.t01	Wine grape	cytosol	75.61	72.73
KRG90981	Soybean	nucleus	73.31	71.93
KRH12470	Soybean	cytosol, endoplasmic reticulum, nucleus	67.94	70.84
KRH35776	Soybean	cytosol	71.9	70.29
Solyc04g005690.2.1	Tomato	cytosol, nucleus	68.45	69.79
KRH36511	Soybean	cytosol	71.39	69.35
Solyc02g081960.2.1	Tomato	cytosol, nucleus	67.94	69.18
PGSC0003DMT400007349	Potato	cytosol	70.5	68.74
PGSC0003DMT400018892	Potato	cytosol	69.99	68.33
Bra016688.1-P	Field mustard	cytosol	59.39	67.2
CDY41093	Canola	cytosol	65.9	66.84
CDX84020	Canola	nucleus	17.62	64.49
CDY45277	Canola	cytosol, plastid	15.2	64.32
CDX84019	Canola	cytosol	15.33	64.17
AT1G14650.1	Thale cress	cytosol	64.11	63.95
CDY52036	Canola	cytosol, plastid	15.07	63.44
Bra026198.1-P	Field mustard	cytosol, plastid	14.81	63.04
TraesCS3B01G212000.1	Wheat	cytosol	46.1	62.46
Os02t0245000-01	Rice	cytosol	62.84	62.12
CDY52037	Canola	cytosol	23.63	62.08
CDY45276	Canola	cytosol	22.73	61.81
Zm00001d008293_P001	Maize	cytosol	63.35	61.54
EES00535	Sorghum	cytosol	62.84	61.27
Zm00001d040343_P003	Maize	cytosol	62.96	61.09
TraesCS3D01G510100.1	Wheat	cytosol	61.69	60.83
TraesCS3A01G503600.1	Wheat	cytosol	61.17	60.56
TraesCS3B01G211900.1	Wheat	cytosol	58.49	59.71
AT1G14640.1	Thale cress	cytosol	54.79	58.37
HORVU3Hr1G110920.1	Barley	cytosol	61.05	58.36
TraesCS3B01G566900.1	Wheat	cytosol	61.3	57.97
AT5G06890.1	Thale cress	cytosol	4.85	57.58
CDY21434	Canola	cytosol	3.83	42.25
Bra000608.1-P	Field mustard	cytosol	3.83	42.25
CDY62788	Canola	cytosol	5.87	38.98
KXG32223	Sorghum	nucleus, plastid	9.07	37.17
CDY71524	Canola	cytosol	12.9	35.69
CDX83169	Canola	plasma membrane	4.47	33.33
CDX89545	Canola	cytosol	7.15	33.33
CDX89548	Canola	cytosol	7.15	33.33
AT5G12280.1	Thale cress	cytosol	17.62	32.94
CDY38929	Canola	cytosol	7.02	32.54
CDY65449	Canola	cytosol	15.84	31.31
Bra032181.1-P	Field mustard	cytosol	8.3	30.09
CDY21696	Canola	cytosol	12.52	28.74
AT3G49130.1	Thale cress	cytosol	10.34	26.38
Bra031050.1-P	Field mustard	cytosol	13.41	26.38
Bra023557.1-P	Field mustard	mitochondrion	7.92	26.05
CDY38128	Canola	cytosol	12.9	25.25
CDY09657	Canola	cytosol, nucleus, plastid	14.69	25.22
AT3G27600.1	Thale cress	cytosol	9.71	24.28
CDY69291	Canola	cytosol, golgi	5.11	24.1
CDY09653	Canola	nucleus	14.56	23.31
CDX81896	Canola	cytosol	6.64	22.51
CDY58992	Canola	cytosol	6.64	22.41
AT4G16200.1	Thale cress	nucleus	7.92	21.53
CDY72308	Canola	cytosol	16.35	19.6
CDY58090	Canola	cytosol	12.64	18.97
CDX71843	Canola	cytosol	5.24	18.81
Bra007503.1-P	Field mustard	cytosol	12.52	18.74
CDY44531	Canola	cytosol	12.9	18.13
CDY38126	Canola	cytosol	18.26	17.35
CDX71844	Canola	cytosol, golgi, plasma membrane	4.34	16.83
AT5G06520.1	Thale cress	cytosol	13.79	15.91
AT1G18050.1	Thale cress	nucleus	2.68	9.38

Protein Annotations

Gene3D:1.10.10.790	MapMan:16.4.1.2.3.1	Gene3D:3.10.20.90	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr3G03970_001	EnsemblPlants:GSMUA_Achr3P03970_001	EnsemblPlants:GSMUA_Achr3T03970_001	InterPro:IPR000061
InterPro:IPR000626	InterPro:IPR035967	UniProt:M0SBL5	PFAM:PF00240	PFAM:PF01805	PFAM:PF12230
PFscan:PS50053	PFscan:PS50128	PANTHER:PTHR15316	PANTHER:PTHR15316:SF1	InterPro:SF3A1	SMART:SM00213
SMART:SM00648	SUPFAM:SSF109905	SUPFAM:SSF54236	InterPro:SWAP/Surp_sf	InterPro:Surp	UniParc:UPI0002960F28
InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	SEG:seg	:	:	:

Description

Probable splicing factor 3A subunit 1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G03970_001]

Coordinates

chr3:-:2555521..2558589

Molecular Weight (calculated)

86453.6 Da

IEP (calculated)

5.108

GRAVY (calculated)

-0.559

Length

783 amino acids

Sequence
(BLAST)

001: MLAPILSLPA PPADGNLGPI PLAQVSNDSS ANKSQEQKEQ SPPAPAPAPV ATHTRTIGII HPPPDIRVII DKTAAFVAKN GPEFEKRILA NNAGNNKFNF
101: LTASDPYHAY YQHKVSEHRA LATAKVDLAA QFRVPPKKVL EPPEAEQYTV RLPEGITGEE LDIIKLTAQF VARNGKNFLT NLTSREMSNP QFHFLKPTHS
201: MFTFFTTLTD AYSKVLMPPT GLTEKLRKST SDLTTVLERC LHRLDWERSQ EQARQKAEDE IEQERLQMAM IDWHDFVVVE TIEFADDEDE ELPLPMTLDE
301: VIRRSKISSL DEEEPMQTVE PGKEMEMEMD EDEMLLVVEG MKATGLDKNG ADEKKREARA SGDEPEPPMR IVKNWKRPEE RIAAERDSTK FVISPITNEL
401: IPINEMAEHM RISLIDPKYK EQKERMMAKI RETTLAPDDE ISRNIVGLAR TRPDIFGTTE EEVSNAVKAE IEKKKDEQPK QVIWDGHSGS IGRTATQALS
501: QGFSGEEQTD ANNNDLRTLP GPAPAPRPGV PFVRPLPPPP GLALNIPRFP PNQVQYSVPA AGGGLVAPPR PGIIPMIPSM RPGPSPMPMT SSSQHVMMGQ
601: QPLSQSIMVN PPNIPVPPPP GSQFTPLVVP RPFVPLPMPP PNMPMVPPPP PPQGMPPPPP PEEAPPLPDE PEPKRQRVDD VSLMAEDQFL AQHPGSSRIS
701: VSVPNVDEGN LKGQLLEIAV QSLSETVGSL KEKIAAEVQL PANKQKLSGR AGFLKDNLTL AYYNIGPGET LTLALRERGG RKR

Best Arabidopsis Sequence Match ( AT1G14650.1 )
(BLAST)

001: MFSSMQILPL EAPPTDGKLG PLPPSQLTDQ EVEERELQAE QNNSNLAPPA AVATHTRTIG IIHPPPDIRT IVEKTAQFVS KNGLEFEKRI IVSNEKNAKF
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR

Arabidopsis Description

Probable splicing factor 3A subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.