Factsheet for Bra026198.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 4
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45277	Canola	cytosol, plastid	96.2	95.68
Bra016688.1-P	Field mustard	cytosol	80.43	21.39
KRH12470	Soybean	cytosol, endoplasmic reticulum, nucleus	70.11	17.18
TraesCS3B01G212000.1	Wheat	cytosol	53.8	17.13
Bra023557.1-P	Field mustard	mitochondrion	21.2	16.39
KRH35776	Soybean	cytosol	70.11	16.1
KRH36511	Soybean	cytosol	70.11	16.0
Solyc04g005690.2.1	Tomato	cytosol, nucleus	66.3	15.89
Solyc02g081960.2.1	Tomato	cytosol, nucleus	66.3	15.86
KRG90981	Soybean	nucleus	68.48	15.79
VIT_01s0011g02040.t01	Wine grape	cytosol	69.02	15.6
PGSC0003DMT400007349	Potato	cytosol	67.39	15.44
PGSC0003DMT400018892	Potato	cytosol	66.85	15.34
GSMUA_Achr3P03970_001	Banana	cytosol	63.04	14.81
GSMUA_Achr9P12650_001	Banana	cytosol	61.96	14.13
TraesCS3B01G211900.1	Wheat	cytosol	55.98	13.43
TraesCS3A01G503600.1	Wheat	cytosol	57.61	13.4
TraesCS3D01G510100.1	Wheat	cytosol	57.61	13.35
Os02t0245000-01	Rice	cytosol	55.98	13.01
TraesCS3B01G566900.1	Wheat	cytosol	57.61	12.8
HORVU3Hr1G110920.1	Barley	cytosol	56.52	12.7
EES00535	Sorghum	cytosol	54.89	12.58
Zm00001d040343_P003	Maize	cytosol	54.35	12.39
Zm00001d008293_P001	Maize	cytosol	53.8	12.28
Bra007503.1-P	Field mustard	cytosol	25.0	8.8
Bra000608.1-P	Field mustard	cytosol	2.17	5.63
KXG32223	Sorghum	nucleus, plastid	4.89	4.71
Bra031050.1-P	Field mustard	cytosol	9.24	4.27
Bra032181.1-P	Field mustard	cytosol	3.26	2.78

Protein Annotations

EnsemblPlants:Bra026198.1	EnsemblPlants:Bra026198.1-P	EnsemblPlantsGene:Bra026198	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000626	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	PFAM:PF00240	PFscan:PS50053
SEG:seg	SMART:SM00213	SUPFAM:SSF54236	UniParc:UPI000253EF42	UniProt:M4EBN9	MapMan:35.1

Description

AT1G14650 (E=5e-056) | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein

Coordinates

chrA06:+:5634754..5635394

Molecular Weight (calculated)

20080.4 Da

IEP (calculated)

7.377

GRAVY (calculated)

-0.721

Length

184 amino acids

Sequence
(BLAST)

001: MPGPPGHQPM MMNRPPQMQH GMPVPPPPGS QFAHLQVPRP YGQLPPTMHG MMQPPPMHGM PPPPPHEEAP PLPEEPEPKR QKFDESALVP EEQFLAQHPG
101: PATIRVSVPN VDDGQVIEIT VHSLSENVGS LKEKIAGETQ IPANKQKLSG KAGFLKDNLS LAHYNVGAGE MLTLSLRERG GRKR

Best Arabidopsis Sequence Match ( AT1G14650.1 )
(BLAST)

001: MFSSMQILPL EAPPTDGKLG PLPPSQLTDQ EVEERELQAE QNNSNLAPPA AVATHTRTIG IIHPPPDIRT IVEKTAQFVS KNGLEFEKRI IVSNEKNAKF
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR

Arabidopsis Description

Probable splicing factor 3A subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.