Factsheet for TraesCS3B01G212000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G211900.1	Wheat	cytosol	96.89	73.01
Os02t0245000-01	Rice	cytosol	81.31	59.34
TraesCS3B01G566900.1	Wheat	cytosol	83.91	58.57
EES00535	Sorghum	cytosol	80.8	58.16
Zm00001d040343_P003	Maize	cytosol	79.58	57.0
Zm00001d008293_P001	Maize	cytosol	79.41	56.95
CDY52036	Canola	cytosol, plastid	17.65	54.84
Bra026198.1-P	Field mustard	cytosol, plastid	17.13	53.8
CDY45277	Canola	cytosol, plastid	16.78	52.43
AT5G06890.1	Thale cress	cytosol	5.88	51.52
CDX84019	Canola	cytosol	16.61	51.34
Bra016688.1-P	Field mustard	cytosol	56.92	47.54
Solyc04g005690.2.1	Tomato	cytosol, nucleus	61.42	46.22
GSMUA_Achr3P03970_001	Banana	cytosol	62.46	46.1
Solyc02g081960.2.1	Tomato	cytosol, nucleus	61.25	46.03
KRH12470	Soybean	cytosol, endoplasmic reticulum, nucleus	59.52	45.81
GSMUA_Achr9P12650_001	Banana	cytosol	63.67	45.6
KRG90981	Soybean	nucleus	62.11	44.99
PGSC0003DMT400007349	Potato	cytosol	61.76	44.46
KRH35776	Soybean	cytosol	61.42	44.32
KRH36511	Soybean	cytosol	61.07	43.8
PGSC0003DMT400018892	Potato	cytosol	60.55	43.64
VIT_01s0011g02040.t01	Wine grape	cytosol	61.42	43.61
CDY41093	Canola	cytosol	57.27	42.88
AT1G14650.1	Thale cress	cytosol	57.09	42.04
CDX84020	Canola	nucleus	14.53	39.25
AT1G14640.1	Thale cress	cytosol	49.31	38.78
CDY21434	Canola	cytosol	4.15	33.8
Bra000608.1-P	Field mustard	cytosol	4.15	33.8
CDY45276	Canola	cytosol	15.22	30.56
CDY52037	Canola	cytosol	15.22	29.53
CDY71524	Canola	cytosol	14.36	29.33
CDX83169	Canola	plasma membrane	4.84	26.67
AT5G12280.1	Thale cress	cytosol	16.26	22.43
CDY65449	Canola	cytosol	15.22	22.22
Bra023557.1-P	Field mustard	mitochondrion	9.0	21.85
AT3G49130.1	Thale cress	cytosol	10.21	19.22
CDY38128	Canola	cytosol	13.15	19.0
Bra032181.1-P	Field mustard	cytosol	6.92	18.52
CDY21696	Canola	cytosol	10.21	17.3
Bra031050.1-P	Field mustard	cytosol	11.59	16.83
AT3G27600.1	Thale cress	cytosol	8.65	15.97
CDY09657	Canola	cytosol, nucleus, plastid	12.11	15.35
CDY58090	Canola	cytosol	13.84	15.33
Bra007503.1-P	Field mustard	cytosol	13.84	15.3
CDX71843	Canola	cytosol	5.71	15.14
CDY72308	Canola	cytosol	16.78	14.85
CDY44531	Canola	cytosol	14.19	14.72
CDY09653	Canola	nucleus	12.11	14.31
CDX89545	Canola	cytosol	4.15	14.29
CDX89548	Canola	cytosol	4.15	14.29
CDX81896	Canola	cytosol	5.71	14.29
CDY58992	Canola	cytosol	5.71	14.22
CDY38929	Canola	cytosol	3.98	13.61
CDY62788	Canola	cytosol	2.77	13.56
CDY69291	Canola	cytosol, golgi	3.81	13.25
AT5G06520.1	Thale cress	cytosol	13.49	11.49
CDY38126	Canola	cytosol	15.92	11.16
AT1G18050.1	Thale cress	nucleus	3.46	8.93
CDX71844	Canola	cytosol, golgi, plasma membrane	3.11	8.91
AT4G16200.1	Thale cress	nucleus	3.81	7.64
KXG32223	Sorghum	nucleus, plastid	1.38	4.19

Protein Annotations

Gene3D:1.10.10.790	MapMan:16.4.1.2.3.1	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	InterPro:IPR000061	InterPro:IPR000626	InterPro:IPR035967	PFAM:PF00240	PFAM:PF01805
PFAM:PF12230	PFscan:PS50053	PFscan:PS50128	PANTHER:PTHR15316	PANTHER:PTHR15316:SF1	InterPro:SF3A1
SMART:SM00213	SMART:SM00648	SUPFAM:SSF109905	SUPFAM:SSF54236	InterPro:SWAP/Surp_sf	InterPro:Surp
EnsemblPlantsGene:TraesCS3B01G212000	EnsemblPlants:TraesCS3B01G212000.1	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	SEG:seg	:

Description

No Description!

Coordinates

chr3B:+:251267989..251269895

Molecular Weight (calculated)

64413.6 Da

IEP (calculated)

5.253

GRAVY (calculated)

-0.563

Length

578 amino acids

Sequence
(BLAST)

001: MVRLPEGITG EELDIIKLTA QFVARDGKNF LTSLAHREST NSQFNLIRPT HSMFTFFTMF ADVYSRVLSP DEGVPALTKE MQEGSIDLTT EQAKQQAEDE
101: LELERVQMSM IDWHDFVVVA TIEFADDEYE GLPVPPTLEE LKRQKRMETL GEEEPMELAE PAKDEGMKAA RLEENGGGAQ VRVAGDQEPP MRIVKNYKRP
201: EERIPTARDP TKFVVSTITR ELIPISEMGE HMRISLIDPK YKEQKERMLA KIKETTLAPD DEVVNNIVGL ARTRPDIFGT TEEEVSNAVK AEIEKKKDEQ
301: PKQVIWDGHS GSIGQTATQA MSMGGEEQVD ASNVPGPAPL PRFVMPLPQP PQPLSLVNVP RFTPNRMPYH LQTPAHHKQG VPHMMSNMHP QMIRMSGPMG
401: PMPKNIPPRP GHITQFMPGP PRFPMPPPPH MQTTPTMVNP IGIPQAPPPL PPQPPAEEQP PLPEEPEPKR QRTDDASLIP VEQFLVQHPG PARILVSVPN
501: LDEGSLRGQV LEISVQSLSD TVGSLKEQIA GELQLPANKQ KLSVRTSFLK DNLSLAYYNV GPGVVINLTL RERGGRKK

Best Arabidopsis Sequence Match ( AT1G14640.1 )
(BLAST)

001: MFNSMKILPL EAPPADGNLG PLPPSQLTDE EIKENEFQGE QNNSIQTPIA VATHTNPIGI IYPPPEIRKI VETTAQFVSQ NGLAFGNKVK TEKANNANFS
101: FLKSDNPYHG FYRYKVTEYS CHIRDGAQGT DVDDTEDPKL DDESDAKPDL QAQFRAPRKI LEAPEPEKYT VRLPEGIMEA ELDIIKHTAQ FVARNGQSFL
201: RELMRREVNN SQFQFMKPTH SMFTFFTSLV DAYSEVLMPP RDLKEKLRKS VADLTTVLER CLNRLEWDRF QEEEKNKEED EKEKERVQMV MIDWKDFAVV
301: ESIDFADEED KDLPMPMTLE EVIRRSKVSA MEEDEIVEPG KEVEMDMDEE EVKLVAEGMR AANLEEYVGS VEIEEEAPMR IVKNWKRPED RFLTERDSSK
401: VVISRITGEL IPITEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAD IEKKDEQPKQ VIWDGHTGSI
501: GRTANQALTQ NSNGEQGDGV YGDPNSFPGP AAFPPPRPGV PTVRPLPPPQ NLALNLPRPP PSVQYPGAPR PLGVPMMQPM YQQHQLSMSG PHGHPSMMMS
601: RPPQMQPVMR VPPPPGSQFS HMQVPQPYGQ LPPLSMGMMQ PPPMAEMPPP PPPGEAPPPL PEEPEPKRQK LDESALVPED QFLAQHPGPA TIRVSKPNEN
701: DGQVMEITVQ SLSENVGSLK EKIAGEMQIP ANKQK

Arabidopsis Description

SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4HW92]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.