Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89548 | Canola | cytosol | 84.62 | 85.12 |
| CDX89545 | Canola | cytosol | 84.02 | 84.52 |
| Bra032181.1-P | Field mustard | cytosol | 68.05 | 53.24 |
| CDY62788 | Canola | cytosol | 20.12 | 28.81 |
| CDY21434 | Canola | cytosol | 10.65 | 25.35 |
| CDX84020 | Canola | nucleus | 26.04 | 20.56 |
| CDY52037 | Canola | cytosol | 35.5 | 20.13 |
| CDX83169 | Canola | plasma membrane | 12.43 | 20.0 |
| KXG32223 | Sorghum | nucleus, plastid | 21.3 | 18.85 |
| CDY45276 | Canola | cytosol | 27.22 | 15.97 |
| CDY21696 | Canola | cytosol | 28.4 | 14.08 |
| CDX81896 | Canola | cytosol | 17.16 | 12.55 |
| CDY58992 | Canola | cytosol | 17.16 | 12.5 |
| CDY65449 | Canola | cytosol | 28.4 | 12.12 |
| CDX71844 | Canola | cytosol, golgi, plasma membrane | 13.61 | 11.39 |
| CDY41093 | Canola | cytosol | 39.65 | 8.68 |
| AT1G14650.1 | Thale cress | cytosol | 39.65 | 8.54 |
| CDY71524 | Canola | cytosol | 14.2 | 8.48 |
| CDY69291 | Canola | cytosol, golgi | 8.28 | 8.43 |
| Os02t0245000-01 | Rice | cytosol | 39.05 | 8.33 |
| TraesCS3B01G211900.1 | Wheat | cytosol | 36.69 | 8.08 |
| Solyc02g081960.2.1 | Tomato | cytosol, nucleus | 36.69 | 8.06 |
| Solyc04g005690.2.1 | Tomato | cytosol, nucleus | 36.09 | 7.94 |
| TraesCS3A01G503600.1 | Wheat | cytosol | 36.69 | 7.84 |
| TraesCS3D01G510100.1 | Wheat | cytosol | 36.69 | 7.81 |
| HORVU3Hr1G110920.1 | Barley | cytosol | 37.28 | 7.69 |
| EES00535 | Sorghum | cytosol | 36.09 | 7.6 |
| Zm00001d008293_P001 | Maize | cytosol | 36.09 | 7.57 |
| VIT_01s0011g02040.t01 | Wine grape | cytosol | 36.09 | 7.49 |
| TraesCS3B01G566900.1 | Wheat | cytosol | 36.69 | 7.49 |
| PGSC0003DMT400007349 | Potato | cytosol | 35.5 | 7.47 |
| KRG90981 | Soybean | nucleus | 34.91 | 7.39 |
| KRH35776 | Soybean | cytosol | 34.91 | 7.37 |
| PGSC0003DMT400018892 | Potato | cytosol | 34.91 | 7.36 |
| CDX71843 | Canola | cytosol | 9.47 | 7.34 |
| KRH36511 | Soybean | cytosol | 34.91 | 7.32 |
| Zm00001d040343_P003 | Maize | cytosol | 34.91 | 7.31 |
| KRH12470 | Soybean | cytosol, endoplasmic reticulum, nucleus | 31.95 | 7.19 |
| GSMUA_Achr9P12650_001 | Banana | cytosol | 33.73 | 7.06 |
| GSMUA_Achr3P03970_001 | Banana | cytosol | 32.54 | 7.02 |
| CDY09657 | Canola | cytosol, nucleus, plastid | 18.93 | 7.02 |
| CDY09653 | Canola | nucleus | 18.93 | 6.54 |
| CDY38126 | Canola | cytosol | 28.99 | 5.95 |
| CDY72308 | Canola | cytosol | 21.89 | 5.67 |
| CDY38128 | Canola | cytosol | 12.43 | 5.25 |
| CDY58090 | Canola | cytosol | 15.98 | 5.17 |
| CDY44531 | Canola | cytosol | 15.98 | 4.85 |
| TraesCS3B01G212000.1 | Wheat | cytosol | 13.61 | 3.98 |
| CDY45277 | Canola | cytosol, plastid | 3.55 | 3.24 |
| CDX84019 | Canola | cytosol | 3.55 | 3.21 |
| CDY52036 | Canola | cytosol, plastid | 2.37 | 2.15 |
Protein Annotations
| Gene3D:1.10.10.790 | MapMan:35.1 | GO:A0A078HNH6 | UniProt:A0A078HNH6 | EnsemblPlants:CDY38929 | ProteinID:CDY38929 |
| ProteinID:CDY38929.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00066971001 | InterPro:IPR000061 |
| InterPro:IPR035967 | PFAM:PF01805 | PFscan:PS50128 | PANTHER:PTHR15316 | SMART:SM00648 | SUPFAM:SSF109905 |
| InterPro:SWAP/Surp_sf | InterPro:Surp | UniParc:UPI0004EE307D | : | : | : |
Description
BnaA04g13500DBnaA04g13500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HNH6]
Coordinates
chrLK032435:+:89876..90385
Molecular Weight (calculated)
19562.3 Da
IEP (calculated)
7.501
GRAVY (calculated)
-0.428
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLTNNDVQ IIEPHPDCRV VLENTALLVS KTGLEMERRI RNSNFRNAKF NFLNNSDPCR AFYQQRLTEY REASPNQEPY APVAVTTDHP ECKGPPSSFT
101: FELEPPHWIT LKEHATLKLT AQSVARYGMS FLEALINKYS TNPHLGFIKF NDPRCYIISF NLFMLIREY
101: FELEPPHWIT LKEHATLKLT AQSVARYGMS FLEALINKYS TNPHLGFIKF NDPRCYIISF NLFMLIREY
001: MFSSMQILPL EAPPTDGKLG PLPPSQLTDQ EVEERELQAE QNNSNLAPPA AVATHTRTIG IIHPPPDIRT IVEKTAQFVS KNGLEFEKRI IVSNEKNAKF
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR
101: NFLKSSDPYH AFYQHKLTEY RAQNKDGAQG TDDSDGTTDP QLDTGAADES EAGDTQPDLQ AQFRIPSKPL EAPEPEKYTV RLPEGITGEE LDIIKLTAQF
201: VARNGKSFLT GLSNRENNNP QFHFMKPTHS MFTFFTSLVD AYSEVLMPPK DLKEKLRKSA ADLTTVLERC LHRLEWDRSQ EQQKKKEEDE KELERVQMAM
301: IDWHDFVVVE SIDFADEEDE ELPPPMTLDE VIRRSKASAM EEDEIVEPGK EVEMEMDEEE VKLVAEGMRA ANLEENVKIE NVHDEEAPMR IVKNWKRPED
401: RIPTERDPTK VVISPITGEL IPINEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE EEVSNAVKAE IEKKKDEQPK
501: QVIWDGHTGS IGRTANQALS QNANGEEQGD GVYGDPNSFP GPAALPPPRP GVPIVRPLPP PPNLALNLPR PPPSAQYPGA PRPLGVPMMQ PMHQQHQLTM
601: PGPPGHPQMM MNRPPQMQPG MHVPPPPGSQ FAHHMQIPRP YGQLPPSAMG MMQPPPMPGM APPPPPEEAP PPLPEEPEAK RQKFDESALV PEDQFLAQHP
701: GPATIRVSKP NENDGQFMEI TVQSLSENVG SLKEKIAGEI QIPANKQKLS GKAGFLKDNM SLAHYNVGAG EILTLSLRER GGRKR
Arabidopsis Description
Probable splicing factor 3A subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXF1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.