CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84019	Canola	cytosol	24.73	37.43
CDY45277	Canola	cytosol, plastid	24.03	36.76
CDY52036	Canola	cytosol, plastid	22.61	34.41
CDX81896	Canola	cytosol	19.08	23.38
CDY58992	Canola	cytosol	19.08	23.28
CDY21434	Canola	cytosol	5.65	22.54
CDY65449	Canola	cytosol	30.04	21.46
CDX84020	Canola	nucleus	14.13	18.69
CDX83169	Canola	plasma membrane	6.71	18.1
CDY21696	Canola	cytosol	21.2	17.6
CDY41093	Canola	cytosol	41.34	15.16
CDX71843	Canola	cytosol	11.66	15.14
CDY38128	Canola	cytosol	21.2	15.0
CDY45276	Canola	cytosol	15.19	14.93
CDX89548	Canola	cytosol	8.83	14.88
CDX89545	Canola	cytosol	8.83	14.88
CDY09657	Canola	cytosol, nucleus, plastid	23.32	14.47
CDY69291	Canola	cytosol, golgi	8.48	14.46
TraesCS3B01G212000.1	Wheat	cytosol	29.33	14.36
CDY38929	Canola	cytosol	8.48	14.2
Solyc04g005690.2.1	Tomato	cytosol, nucleus	37.46	13.8
CDY52037	Canola	cytosol	14.49	13.76
KRH12470	Soybean	cytosol, endoplasmic reticulum, nucleus	36.4	13.71
KRG90981	Soybean	nucleus	38.16	13.53
Solyc02g081960.2.1	Tomato	cytosol, nucleus	36.4	13.39
PGSC0003DMT400007349	Potato	cytosol	37.81	13.32
KRH35776	Soybean	cytosol	37.46	13.23
KRH36511	Soybean	cytosol	37.46	13.15
CDY09653	Canola	nucleus	22.61	13.09
VIT_01s0011g02040.t01	Wine grape	cytosol	37.46	13.02
GSMUA_Achr3P03970_001	Banana	cytosol	35.69	12.9
PGSC0003DMT400018892	Potato	cytosol	36.4	12.84
CDY58090	Canola	cytosol	23.32	12.64
CDX71844	Canola	cytosol, golgi, plasma membrane	8.83	12.38
GSMUA_Achr9P12650_001	Banana	cytosol	34.63	12.14
TraesCS3B01G211900.1	Wheat	cytosol	32.51	11.99
Os02t0245000-01	Rice	cytosol	32.51	11.62
EES00535	Sorghum	cytosol	32.86	11.58
Zm00001d040343_P003	Maize	cytosol	32.86	11.52
TraesCS3A01G503600.1	Wheat	cytosol	32.16	11.5
CDY44531	Canola	cytosol	22.61	11.49
TraesCS3D01G510100.1	Wheat	cytosol	32.16	11.46
Zm00001d008293_P001	Maize	cytosol	32.51	11.41
TraesCS3B01G566900.1	Wheat	cytosol	32.51	11.11
CDY72308	Canola	cytosol	24.73	10.72
HORVU3Hr1G110920.1	Barley	cytosol	30.74	10.62
CDY62788	Canola	cytosol	2.83	6.78
CDY38126	Canola	cytosol	19.43	6.67
KXG32223	Sorghum	nucleus, plastid	3.89	5.76

Protein Annotations

Gene3D:1.10.10.790	Gene3D:3.10.20.90	MapMan:35.1	GO:A0A078JXV0	UniProt:A0A078JXV0	EnsemblPlants:CDY71524
ProteinID:CDY71524	ProteinID:CDY71524.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00016878001	InterPro:IPR000061	InterPro:IPR035967	PFAM:PF01805	PFscan:PS50128	PANTHER:PTHR15316
PANTHER:PTHR15316:SF1	SUPFAM:SSF109905	SUPFAM:SSF54236	InterPro:SWAP/Surp_sf	InterPro:Surp	UniParc:UPI0004EE46E6
InterPro:Ubiquitin-like_domsf	SEG:seg	:	:	:	:

Description

BnaCnng73310DBnaCnng73310D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JXV0]

Coordinates

chrLK046223:+:1631..2554

Molecular Weight (calculated)

32297.9 Da

IEP (calculated)

8.662

GRAVY (calculated)

-0.310

Length

283 amino acids

Sequence
(BLAST)

001: MLSDGMLDAP PTDDDAQGQP NPLFTYPPIP RDYPFTYPKG ITRRQLGIIK VTAQFYVRYG YTFLMALIRR VAIIENSQLK SQFEFIMSED KYSFFYRLVT
101: VYSNVLMPSC TCPERAVLKG FFNLLQGENQ EVEVGVEMSE SDLHSYVGAL DYFANREDQE LTSHGCFSSA PTQMRPCLPV PLPKGTQWLF LLRHCHYVRN
201: QSQRDKLNKS ALVPKDQFLV QHSGSVTIRV SFPNVNSEQV IEITLQSLSE NVASLKEKIA RKIQIPANKH KLWGKAGFLK KDT

Best Arabidopsis Sequence Match ( AT5G12280.1 )
(BLAST)

001: MVGTLSPDTP DTQFISLCYK LQIVEVVRSP LFSTSRPGGS RGRAMRSRLR LHKPIILGQM KFGESDFDVS YDLIFMLEKD NSNEAPAEPP REMRIHMDKI
101: ARVVARKGLR IERKIMNVSE YLAKNQDEGA QEPEAPATLK GDAQHYRRPF LLSDPAPKFP DYVLPEGYTI EDVDTIFLTA QIVGRYGEEF WLDLIKEVDN
201: KPQFEFLKPA DSKFDYFNRL SVVASEGLKR SEKLTSSRMA IVSKAFFYHL RRQNEKRELT HKEGAAKACT LFGALYAFVG PDGCFADIKD EDLPLLQHPS
301: AIKNILTKLQ PRMPPLGGES EEPEFDESVL VPEDQFLAQH PGSSTIMVSV PDPDDWKVVK ITVQSLSENV ASLKEKISGE IQFPTNKQKL RGKAGFLKDN
401: TSLAHYNVGA GEILTLSWW

Arabidopsis Description

SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q94CL4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.