Factsheet for AT1G18050.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G06890.1	Thale cress	cytosol	1.34	4.55
AT3G49130.1	Thale cress	cytosol	5.8	4.23
AT5G12280.1	Thale cress	cytosol	7.14	3.82
AT3G27600.1	Thale cress	cytosol	4.91	3.51
CDY38128	Canola	cytosol	6.25	3.5
TraesCS3B01G212000.1	Wheat	cytosol	8.93	3.46
AT1G14640.1	Thale cress	cytosol	11.16	3.4
Solyc04g005690.2.1	Tomato	cytosol, nucleus	11.61	3.39
Solyc02g081960.2.1	Tomato	cytosol, nucleus	11.61	3.38
Bra023557.1-P	Field mustard	mitochondrion	3.57	3.36
AT1G14650.1	Thale cress	cytosol	11.61	3.31
PGSC0003DMT400018892	Potato	cytosol	11.61	3.24
PGSC0003DMT400007349	Potato	cytosol	11.61	3.24
VIT_01s0011g02040.t01	Wine grape	cytosol	11.61	3.19
KRG90981	Soybean	nucleus	11.16	3.13
KRH36511	Soybean	cytosol	11.16	3.1
TraesCS3B01G211900.1	Wheat	cytosol	10.27	3.0
KRH35776	Soybean	cytosol	10.71	3.0
HORVU3Hr1G110920.1	Barley	cytosol	10.71	2.93
KRH12470	Soybean	cytosol, endoplasmic reticulum, nucleus	9.82	2.93
TraesCS3A01G503600.1	Wheat	cytosol	10.27	2.91
TraesCS3D01G510100.1	Wheat	cytosol	10.27	2.9
EES00535	Sorghum	cytosol	10.27	2.86
Zm00001d040343_P003	Maize	cytosol	10.27	2.85
Os02t0245000-01	Rice	cytosol	9.82	2.78
TraesCS3B01G566900.1	Wheat	cytosol	10.27	2.78
Zm00001d008293_P001	Maize	cytosol	9.82	2.73
GSMUA_Achr9P12650_001	Banana	cytosol	9.82	2.73
GSMUA_Achr3P03970_001	Banana	cytosol	9.38	2.68
AT5G06520.1	Thale cress	cytosol	7.14	2.36
CDY38126	Canola	cytosol	8.04	2.18
AT4G16200.1	Thale cress	nucleus	2.68	2.08
KXG32223	Sorghum	nucleus, plastid	1.34	1.57

Protein Annotations

Gene3D:1.10.10.790	MapMan:35.2	EntrezGene:838385	ProteinID:AEE29668.2	ArrayExpress:AT1G18050	EnsemblPlantsGene:AT1G18050
RefSeq:AT1G18050	TAIR:AT1G18050	RefSeq:AT1G18050-TAIR-G	EnsemblPlants:AT1G18050.1	TAIR:AT1G18050.1	Unigene:At.51658
UniProt:F4IAL8	GO:GO:0000381	GO:GO:0000389	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005686
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0071004	GO:GO:0071013	InterPro:IPR000061	InterPro:IPR035967	RefSeq:NP_001319032.1	PFAM:PF01805
PFscan:PS50128	PANTHER:PTHR15316	SMART:SM00648	SUPFAM:SSF109905	InterPro:SWAP/Surp_sf	InterPro:Surp
UniParc:UPI0008492722	SEG:seg	:	:	:	:

Description

SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein [Source:TAIR;Acc:AT1G18050]

Coordinates

chr1:-:6209771..6211588

Molecular Weight (calculated)

26228.5 Da

IEP (calculated)

6.677

GRAVY (calculated)

-0.771

Length

224 amino acids

Sequence
(BLAST)

001: MSLIHHDPDL DGDVDPEAED RDNFHLEEML NEWTDEPPIR HDVYPESDGE GADDSSDIHV RRGDGFLYQK QSFFSGVAFK EAVIDYALRT GHNPTSLWHS
101: NHSSSTTSFR TRVRSFTTSL WLSRRGCYFP VEKRCRVICN RTPADVPPRT RYYADSSARL VFMEGPEMER KMMTSYAGNP KYSFFWSSDR YHAYYQKKLA
201: GYRAQNYMRD LRSNLVIMGY LMFH

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.