Factsheet for Bra023557.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026198.1-P	Field mustard	cytosol, plastid	16.39	21.2
CDY38128	Canola	cytosol	33.61	20.0
Bra032181.1-P	Field mustard	cytosol	11.76	12.96
Bra000608.1-P	Field mustard	cytosol	3.36	11.27
Bra016688.1-P	Field mustard	cytosol	30.67	10.55
KRH12470	Soybean	cytosol, endoplasmic reticulum, nucleus	29.83	9.45
TraesCS3B01G212000.1	Wheat	cytosol	21.85	9.0
Solyc02g081960.2.1	Tomato	cytosol, nucleus	28.99	8.97
KRH35776	Soybean	cytosol	29.83	8.86
Solyc04g005690.2.1	Tomato	cytosol, nucleus	28.57	8.85
KRH36511	Soybean	cytosol	29.83	8.81
KRG90981	Soybean	nucleus	29.41	8.77
PGSC0003DMT400018892	Potato	cytosol	29.41	8.73
PGSC0003DMT400007349	Potato	cytosol	28.57	8.47
VIT_01s0011g02040.t01	Wine grape	cytosol	28.15	8.23
Bra031050.1-P	Field mustard	cytosol	13.45	8.04
GSMUA_Achr9P12650_001	Banana	cytosol	26.89	7.93
GSMUA_Achr3P03970_001	Banana	cytosol	26.05	7.92
Zm00001d008293_P001	Maize	cytosol	25.21	7.44
TraesCS3B01G211900.1	Wheat	cytosol	23.95	7.43
TraesCS3A01G503600.1	Wheat	cytosol	24.37	7.33
Zm00001d040343_P003	Maize	cytosol	24.79	7.31
TraesCS3D01G510100.1	Wheat	cytosol	24.37	7.3
Bra007503.1-P	Field mustard	cytosol	15.97	7.27
EES00535	Sorghum	cytosol	24.37	7.22
TraesCS3B01G566900.1	Wheat	cytosol	24.37	7.0
Os02t0245000-01	Rice	cytosol	23.11	6.94
HORVU3Hr1G110920.1	Barley	cytosol	23.53	6.84
AT1G18050.1	Thale cress	nucleus	3.36	3.57
KXG32223	Sorghum	nucleus, plastid	1.68	2.09

Protein Annotations

Gene3D:1.10.10.790	MapMan:35.2	EnsemblPlantsGene:Bra023557	EnsemblPlants:Bra023557.1	EnsemblPlants:Bra023557.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	InterPro:IPR000061	InterPro:IPR035967	UniProt:M4E454	PFAM:PF01805
PFscan:PS50128	PANTHER:PTHR15316	PANTHER:PTHR15316:SF1	SMART:SM00648	SUPFAM:SSF109905	InterPro:SWAP/Surp_sf
InterPro:Surp	UniParc:UPI000254303C	SEG:seg	:	:	:

Description

AT3G49130 (E=3e-017) | RNA binding

Coordinates

chrA02:-:3922118..3923855

Molecular Weight (calculated)

27111.5 Da

IEP (calculated)

7.665

GRAVY (calculated)

-0.427

Length

238 amino acids

Sequence
(BLAST)

001: MKVTAQFVAR YGTKFTGALA RRVAKTTQFE FMNPTSGRSR FYTWYVERLA EVLRPYKKGD AFNQEKKRDA CMNTVLEDFF SCLDRLQQEE EEASGVALHG
101: FVDVVDCFAS MDHVLYQQHL TPPGSQVHLG AYGHPLMGMM QPAPPKLGVM SLPPPMPLPE QREPKRQKFD VSDLAPEDRL HNFQGWSTIK VFVPNVDIVH
201: VPRTENLRAD SLARSGRKQP SFVVHIDAEL PNWFTESI

Best Arabidopsis Sequence Match ( AT3G49130.1 )
(BLAST)

001: MVDLFDFVGG GNYSAAMPPP ERLSVMIMNR VAQTQPDMVL QLPLGSQLTI PAKGITLKEL GVMKLTAQSS VRYGFDFWCG LWKRVYMNPL FQFLNPSDSR
101: SDFYNGFTAA YSRVLKPSKK LKKFDACTAT VLEGFFHRLH LFKLEEGVET AMIDLHGFVY GVDCFAHMAD DNYSAIMDPP ERPSMMINQL TQIQRNAPAP
201: HEKCLKRSYN FPYAFGGGIS LKELDLMKKV VMKPQFKFME PTNSVFGLYN VVVDAYSRVV KPSDDAYASM GMMQTARPEE PEAKRQKFDE SALNPEGAVR
301: RRHSRWQ

Arabidopsis Description

SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9SMU9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.