CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, cytosol

Predictor Summary:

nucleus 1
golgi 1
mitochondrion 2
plastid 1
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22653
KRH26664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32750.1	KRH22653	AT5G22290.1	21798944
AT4G32750.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62026	Soybean	plasma membrane	95.89	95.89
VIT_04s0008g03740.t01	Wine grape	plasma membrane	73.63	73.88
AT4G32750.1	Thale cress	plasma membrane	71.58	71.33
Solyc08g068350.2.1	Tomato	plasma membrane	74.32	70.92
CDY45015	Canola	plasma membrane	70.21	69.73
Bra034532.1-P	Field mustard	plasma membrane	69.86	69.39
CDY49321	Canola	plasma membrane	69.86	69.39
PGSC0003DMT400028111	Potato	plasma membrane	73.29	69.26
CDX75281	Canola	endoplasmic reticulum	40.07	68.82
Bra011377.1-P	Field mustard	plasma membrane	39.73	68.24
GSMUA_Achr10P...	Banana	cytosol, extracellular, plasma membrane	65.41	63.67
Os02t0272400-00	Rice	mitochondrion	54.11	52.15
Zm00001d053306_P001	Maize	mitochondrion	53.08	50.65
EES04915	Sorghum	mitochondrion	53.08	50.65
Bra037044.1-P	Field mustard	plasma membrane	31.16	50.28
TraesCS6B01G229000.1	Wheat	cytosol, plasma membrane, vacuole	48.63	49.82
CDX72369	Canola	plasma membrane	44.18	44.18
HORVU6Hr1G051240.4	Barley	cytosol, plasma membrane	44.52	42.76
CDY13500	Canola	golgi, plasma membrane	22.26	41.67

Protein Annotations

EMBL:ACUP02003427	EnsemblPlants:KRH52686	EnsemblPlantsGene:GLYMA_06G082600	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR36060	ProteinID:KRH52686	ProteinID:KRH52686.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000233A742
UniProt:I1K9A1	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:6348082..6351110

Molecular Weight (calculated)

32352.3 Da

IEP (calculated)

6.514

GRAVY (calculated)

0.188

Length

292 amino acids

Sequence
(BLAST)

001: MAIIGDALRQ AFMPKREYES LREEDKAWGK LQRPVTVASV AVIVLAIVVS TVISLKIVFP SSDGRRAFCV DRRLQSIQLG MKGGPDSDLF PGAFYLTDQE
101: IADYYWMVVF IPSMIVFALS VVYLVAGMAV AYSAPNRHGC LKVVENNYCA SRRGGVRCLS ILNLIFAIVF GGLALFLGSS LLTMMSNCSK PLFWCYEIAC
201: WGLVVLYGGT AFFLRRKAAT ILDEGNFSGR NLGLEMLEAS PLEVTPEVER RVNEGFKAWM GPSLLSSDEE DEPNSYDEAP HSARTNSNRQ RL

Best Arabidopsis Sequence Match ( AT4G32750.1 )
(BLAST)

001: MAIIGDALRQ AFMPKQEYES LREEDRAWIK LQRPTLVSIV AFLCFVIFTC TIVSLKIVFP SNVLKRPFCS DIKLQPLPIY GKARDSDLFP GAFYLTDQET
101: VDYYWMVVFV PSTIIFLVSS VYLVAGIFVA YSAPHRHGFL KVVENNYCAS RRGGVRCLSI LNVVFAIIYG LLAIFLGSSL LTLGSSCSVP LFWCYEISSW
201: GLVILYAGTA FSLRRRAALT IDEGEFGNRN DQGLEMLEAN PLEFTPDVER RVNEGFKAWM GPSLLSSDEE EDEPDFYNEV PNVTHTLSSR QRS

Arabidopsis Description

At4g32750 [Source:UniProtKB/TrEMBL;Acc:Q8LA21]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.