CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX88803
CDX92368
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32750.1	CDX70995	AT5G22290.1	21798944
AT4G32750.1	CDX88803	AT5G22290.1	21798944
AT4G32750.1	CDX92368	AT5G22290.1	21798944
AT4G32750.1	CDY09128	AT5G22290.1	21798944
AT4G32750.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034532.1-P	Field mustard	plasma membrane	99.32	99.32
CDY49321	Canola	plasma membrane	97.28	97.28
AT4G32750.1	Thale cress	plasma membrane	92.18	92.49
CDX75281	Canola	endoplasmic reticulum	48.98	84.71
KRH62026	Soybean	plasma membrane	70.41	70.89
KRH52686	Soybean	cytosol, golgi, plasma membrane	69.73	70.21
VIT_04s0008g03740.t01	Wine grape	plasma membrane	68.03	68.73
Solyc08g068350.2.1	Tomato	plasma membrane	69.05	66.34
PGSC0003DMT400028111	Potato	plasma membrane	68.71	65.37
GSMUA_Achr10P...	Banana	cytosol, extracellular, plasma membrane	61.9	60.67
CDX72369	Canola	plasma membrane	55.78	56.16
CDY13500	Canola	golgi, plasma membrane	29.25	55.13
Os02t0272400-00	Rice	mitochondrion	56.8	55.12
Zm00001d053306_P001	Maize	mitochondrion	53.06	50.98
EES04915	Sorghum	mitochondrion	53.06	50.98
TraesCS6B01G229000.1	Wheat	cytosol, plasma membrane, vacuole	48.98	50.53
HORVU6Hr1G051240.4	Barley	cytosol, plasma membrane	45.24	43.75

Protein Annotations

EnsemblPlants:CDY45015	EnsemblPlantsGene:GSBRNA2T00081256001	GO:A0A078I2F9	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR36060	ProteinID:CDY45015	ProteinID:CDY45015.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EEE5EF
UniProt:A0A078I2F9	MapMan:35.2	:	:	:	:

Description

BnaA08g12040DBnaA08g12040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I2F9]

Coordinates

chrLK032611:-:4688..7003

Molecular Weight (calculated)

33404.4 Da

IEP (calculated)

5.736

GRAVY (calculated)

0.247

Length

294 amino acids

Sequence
(BLAST)

001: MAIIGDALRQ AFMPKQEYES LREEDRAWIK LQRPVLTSIV AFLCFVIFTC TVVSLRIVFP SNVLRRPFCS DVKVQPLPTY GKARDSDLFP GAFYLTDQET
101: VDFYWMVVFV PSTIVFLVSS VYLVAGIFVA YSVPHRHWFL KVVENNYCAS RRGGVRCLSI LNVVFAIIYG LLAIFLGSTL LTLGSSCSMP LFWCYEISSW
201: GLVILYAGTA FCLRRRAALT IDEGEFGYRN HQGLEMLEAN PLVFTPEVER RVNEGFKAWM GPSLLSSDEE EDESEFYNEV PNVTAHTLSS RQRS

Best Arabidopsis Sequence Match ( AT4G32750.1 )
(BLAST)

001: MAIIGDALRQ AFMPKQEYES LREEDRAWIK LQRPTLVSIV AFLCFVIFTC TIVSLKIVFP SNVLKRPFCS DIKLQPLPIY GKARDSDLFP GAFYLTDQET
101: VDYYWMVVFV PSTIIFLVSS VYLVAGIFVA YSAPHRHGFL KVVENNYCAS RRGGVRCLSI LNVVFAIIYG LLAIFLGSSL LTLGSSCSVP LFWCYEISSW
201: GLVILYAGTA FSLRRRAALT IDEGEFGNRN DQGLEMLEAN PLEFTPDVER RVNEGFKAWM GPSLLSSDEE EDEPDFYNEV PNVTHTLSSR QRS

Arabidopsis Description

At4g32750 [Source:UniProtKB/TrEMBL;Acc:Q8LA21]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.