CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX88803
CDX92368
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32750.1	CDX70995	AT5G22290.1	21798944
AT4G32750.1	CDX88803	AT5G22290.1	21798944
AT4G32750.1	CDX92368	AT5G22290.1	21798944
AT4G32750.1	CDY09128	AT5G22290.1	21798944
AT4G32750.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037044.1-P	Field mustard	plasma membrane	83.97	72.38
CDX75281	Canola	endoplasmic reticulum	33.97	31.18
AT4G32750.1	Thale cress	plasma membrane	55.13	29.35
CDY45015	Canola	plasma membrane	55.13	29.25
CDY49321	Canola	plasma membrane	55.13	29.25
CDX72369	Canola	plasma membrane	44.87	23.97
VIT_04s0008g03740.t01	Wine grape	plasma membrane	42.95	23.02
PGSC0003DMT400028111	Potato	plasma membrane	45.51	22.98
Solyc08g068350.2.1	Tomato	plasma membrane	44.87	22.88
KRH52686	Soybean	cytosol, golgi, plasma membrane	41.67	22.26
KRH62026	Soybean	plasma membrane	41.03	21.92
GSMUA_Achr10P...	Banana	cytosol, extracellular, plasma membrane	35.26	18.33
EES04915	Sorghum	mitochondrion	35.26	17.97
Zm00001d053306_P001	Maize	mitochondrion	34.62	17.65
Os02t0272400-00	Rice	mitochondrion	33.97	17.49
TraesCS6B01G229000.1	Wheat	cytosol, plasma membrane, vacuole	28.85	15.79
HORVU6Hr1G051240.4	Barley	cytosol, plasma membrane	28.85	14.8

Protein Annotations

EnsemblPlants:CDY13500	EnsemblPlantsGene:GSBRNA2T00077810001	GO:A0A078FGB9	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR36060	ProteinID:CDY13500	ProteinID:CDY13500.1	TMHMM:TMhelix	UniParc:UPI0004EEC2CB	UniProt:A0A078FGB9
MapMan:35.2	:	:	:	:	:

Description

BnaA03g52180DBnaA03g52180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGB9]

Coordinates

chrLK032035:-:706773..709328

Molecular Weight (calculated)

18115.2 Da

IEP (calculated)

8.922

GRAVY (calculated)

-0.061

Length

156 amino acids

Sequence
(BLAST)

001: MVRSAIHRTV VICCVIFTCT IVSLRSVFRW NGLRRPFSGD VLFNQETVDF YWMVVCCGVR CLSILNVVFA IILRSPSYIS RLKPPDTRKQ LRRAALTNDE
101: GEFGNRNHQG LEMLEANPLE FTPDVERKHG WIHLCYHLMK KTNLSITMKF PQDHDS

Best Arabidopsis Sequence Match ( AT4G32750.1 )
(BLAST)

001: MAIIGDALRQ AFMPKQEYES LREEDRAWIK LQRPTLVSIV AFLCFVIFTC TIVSLKIVFP SNVLKRPFCS DIKLQPLPIY GKARDSDLFP GAFYLTDQET
101: VDYYWMVVFV PSTIIFLVSS VYLVAGIFVA YSAPHRHGFL KVVENNYCAS RRGGVRCLSI LNVVFAIIYG LLAIFLGSSL LTLGSSCSVP LFWCYEISSW
201: GLVILYAGTA FSLRRRAALT IDEGEFGNRN DQGLEMLEAN PLEFTPDVER RVNEGFKAWM GPSLLSSDEE EDEPDFYNEV PNVTHTLSSR QRS

Arabidopsis Description

At4g32750 [Source:UniProtKB/TrEMBL;Acc:Q8LA21]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.