CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX88803
CDX92368
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32750.1	CDX70995	AT5G22290.1	21798944
AT4G32750.1	CDX88803	AT5G22290.1	21798944
AT4G32750.1	CDX92368	AT5G22290.1	21798944
AT4G32750.1	CDY09128	AT5G22290.1	21798944
AT4G32750.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45015	Canola	plasma membrane	97.28	97.28
AT4G32750.1	Thale cress	plasma membrane	91.84	92.15
CDX75281	Canola	endoplasmic reticulum	50.0	86.47
KRH62026	Soybean	plasma membrane	70.07	70.55
KRH52686	Soybean	cytosol, golgi, plasma membrane	69.39	69.86
VIT_04s0008g03740.t01	Wine grape	plasma membrane	68.03	68.73
Solyc08g068350.2.1	Tomato	plasma membrane	68.37	65.69
PGSC0003DMT400028111	Potato	plasma membrane	68.03	64.72
GSMUA_Achr10P...	Banana	cytosol, extracellular, plasma membrane	62.59	61.33
CDX72369	Canola	plasma membrane	55.44	55.82
CDY13500	Canola	golgi, plasma membrane	29.25	55.13
Os02t0272400-00	Rice	mitochondrion	56.46	54.79
EES04915	Sorghum	mitochondrion	53.4	51.31
Zm00001d053306_P001	Maize	mitochondrion	53.4	51.31
TraesCS6B01G229000.1	Wheat	cytosol, plasma membrane, vacuole	49.32	50.88
HORVU6Hr1G051240.4	Barley	cytosol, plasma membrane	45.58	44.08

Protein Annotations

EnsemblPlants:CDY49321	EnsemblPlantsGene:GSBRNA2T00092843001	GO:A0A078IH52	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR36060	ProteinID:CDY49321	ProteinID:CDY49321.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EEB8D0
UniProt:A0A078IH52	MapMan:35.2	:	:	:	:

Description

BnaC03g66930DBnaC03g66930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IH52]

Coordinates

chrLK032825:-:27048..29234

Molecular Weight (calculated)

33423.5 Da

IEP (calculated)

5.739

GRAVY (calculated)

0.250

Length

294 amino acids

Sequence
(BLAST)

001: MAIIGDALRQ AFMPKQEYES LREEERAWIK LQRPVLTSIV AFLCFVIFTC TVVSLRIVFP SNVLRRPFCS DVKVQPLPVY GKARDSDLFP GAFYLTDQET
101: VDFYWMVVFV PSTVVFLVSS VYLVAGIFVA YSVPHRHWFL KVVENNYCAS RRGGVRCLSI LNVVFAIIYC LLAIFLGSTL LTLGSSCSMP LFWCYEISSW
201: GLVILYAGTA FSLRRRAALT IDEGEFSNRN HQGLEMLEAN PLVFTPEVER RVNEGFKAWM GPSLLSSDEE EDEPEFYNEV PNVTAHTLSS RQRS

Best Arabidopsis Sequence Match ( AT4G32750.1 )
(BLAST)

001: MAIIGDALRQ AFMPKQEYES LREEDRAWIK LQRPTLVSIV AFLCFVIFTC TIVSLKIVFP SNVLKRPFCS DIKLQPLPIY GKARDSDLFP GAFYLTDQET
101: VDYYWMVVFV PSTIIFLVSS VYLVAGIFVA YSAPHRHGFL KVVENNYCAS RRGGVRCLSI LNVVFAIIYG LLAIFLGSSL LTLGSSCSVP LFWCYEISSW
201: GLVILYAGTA FSLRRRAALT IDEGEFGNRN DQGLEMLEAN PLEFTPDVER RVNEGFKAWM GPSLLSSDEE EDEPDFYNEV PNVTHTLSSR QRS

Arabidopsis Description

At4g32750 [Source:UniProtKB/TrEMBL;Acc:Q8LA21]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.