Factsheet for VIT_04s0008g03740.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0080g00970.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32750.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62026	Soybean	plasma membrane	74.23	73.97
KRH52686	Soybean	cytosol, golgi, plasma membrane	73.88	73.63
AT4G32750.1	Thale cress	plasma membrane	72.16	71.67
Solyc08g068350.2.1	Tomato	plasma membrane	75.26	71.57
PGSC0003DMT400028111	Potato	plasma membrane	73.88	69.58
CDX75281	Canola	endoplasmic reticulum	40.21	68.82
Bra011377.1-P	Field mustard	plasma membrane	39.86	68.24
Bra034532.1-P	Field mustard	plasma membrane	68.73	68.03
CDY45015	Canola	plasma membrane	68.73	68.03
CDY49321	Canola	plasma membrane	68.73	68.03
GSMUA_Achr10P...	Banana	cytosol, extracellular, plasma membrane	65.64	63.67
Os02t0272400-00	Rice	mitochondrion	57.39	55.12
Zm00001d053306_P001	Maize	mitochondrion	56.01	53.27
EES04915	Sorghum	mitochondrion	56.01	53.27
TraesCS6B01G229000.1	Wheat	cytosol, plasma membrane, vacuole	50.86	51.93
Bra037044.1-P	Field mustard	plasma membrane	31.96	51.38
HORVU6Hr1G051240.4	Barley	cytosol, plasma membrane	48.11	46.05
CDX72369	Canola	plasma membrane	46.05	45.89
CDY13500	Canola	golgi, plasma membrane	23.02	42.95

Protein Annotations

ArrayExpress:VIT_04s0008g03740	EMBL:FN595231	EnsemblPlants:VIT_04s0008g03740.t01	EnsemblPlantsGene:VIT_04s0008g03740	EntrezGene:100244114	EntrezGene:LOC100244114
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	ncoils:Coil	PANTHER:PTHR36060	ProteinID:CBI20883
ProteinID:CBI20883.3	RefSeq:XP_002284095	RefSeq:XP_002284095.2	SEG:seg	TMHMM:TMhelix	UniParc:UPI00015C896D
UniProt:D7SUD4	wikigene:100244114	wikigene:LOC100244114	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr4:+:3084711..3087401

Molecular Weight (calculated)

32166.9 Da

IEP (calculated)

4.827

GRAVY (calculated)

0.293

Length

291 amino acids

Sequence
(BLAST)

001: MAIIGDALRQ AFMPKHEYDA LREEDKAWIH LQRPLLICSL AIVTFAIVIS TVISLNIVFP GNSAKRPFCG DPRLQQLSVS AAKGGDSDLF PGAFYLTDQE
101: TADYYWMVVF IPSMLIFFAS SVYLLAGMTV AYSAPTRHGC LKVVENNYCA SKRGGVRCLS ILNIVFAIIF GLLALFLGSS LLTLGSSCSI TLFWCYEVGT
201: WGLVLLYGGT AFFLRRKAAV ILDEGDFAGR NLGLEMLEAS PLEVNPDVER RVNEGFKAWM GSSLLSSDEE DEPDSYQEVV YPTPTNSYRR V

Best Arabidopsis Sequence Match ( AT4G32750.1 )
(BLAST)

001: MAIIGDALRQ AFMPKQEYES LREEDRAWIK LQRPTLVSIV AFLCFVIFTC TIVSLKIVFP SNVLKRPFCS DIKLQPLPIY GKARDSDLFP GAFYLTDQET
101: VDYYWMVVFV PSTIIFLVSS VYLVAGIFVA YSAPHRHGFL KVVENNYCAS RRGGVRCLSI LNVVFAIIYG LLAIFLGSSL LTLGSSCSVP LFWCYEISSW
201: GLVILYAGTA FSLRRRAALT IDEGEFGNRN DQGLEMLEAN PLEFTPDVER RVNEGFKAWM GPSLLSSDEE EDEPDFYNEV PNVTHTLSSR QRS

Arabidopsis Description

At4g32750 [Source:UniProtKB/TrEMBL;Acc:Q8LA21]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.