Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 4
- extracellular 1
- golgi 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G32750.1 | CDX70995 | AT5G22290.1 | 21798944 |
| AT4G32750.1 | CDX88803 | AT5G22290.1 | 21798944 |
| AT4G32750.1 | CDX92368 | AT5G22290.1 | 21798944 |
| AT4G32750.1 | CDY09128 | AT5G22290.1 | 21798944 |
| AT4G32750.1 | CDY35676 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75281 | Canola | endoplasmic reticulum | 37.67 | 64.71 |
| AT4G32750.1 | Thale cress | plasma membrane | 56.16 | 55.97 |
| CDY45015 | Canola | plasma membrane | 56.16 | 55.78 |
| CDY49321 | Canola | plasma membrane | 55.82 | 55.44 |
| VIT_04s0008g03740.t01 | Wine grape | plasma membrane | 45.89 | 46.05 |
| CDY13500 | Canola | golgi, plasma membrane | 23.97 | 44.87 |
| KRH52686 | Soybean | cytosol, golgi, plasma membrane | 44.18 | 44.18 |
| KRH62026 | Soybean | plasma membrane | 43.84 | 43.84 |
| PGSC0003DMT400028111 | Potato | plasma membrane | 45.21 | 42.72 |
| Solyc08g068350.2.1 | Tomato | plasma membrane | 44.52 | 42.48 |
| GSMUA_Achr10P... | Banana | cytosol, extracellular, plasma membrane | 42.81 | 41.67 |
| Os02t0272400-00 | Rice | mitochondrion | 41.78 | 40.26 |
| Zm00001d053306_P001 | Maize | mitochondrion | 40.07 | 38.24 |
| EES04915 | Sorghum | mitochondrion | 39.38 | 37.58 |
| TraesCS6B01G229000.1 | Wheat | cytosol, plasma membrane, vacuole | 36.64 | 37.54 |
| HORVU6Hr1G051240.4 | Barley | cytosol, plasma membrane | 35.62 | 34.21 |
Protein Annotations
| EnsemblPlants:CDX72369 | EnsemblPlantsGene:GSBRNA2T00099862001 | GO:A0A078C846 | PANTHER:PTHR36060 | ProteinID:CDX72369 | ProteinID:CDX72369.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EDCF9A | MapMan:35.2 | : | : |
Description
BnaC07g43910D
Coordinates
chrLK031796:-:883833..885660
Molecular Weight (calculated)
33240.0 Da
IEP (calculated)
4.447
GRAVY (calculated)
0.236
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MPKQECESLR EEEDIALIKL QRQWVSFALS SSLHDLHLEN CVSFECSEEA VLRRRAFYLT DQETVDFYWM VVFLPSMMIF LVSSVYLVAA LSELVGNFCG
101: LFGSSPSLLK ITIVLQEEAI DLLDPVSGKF TGGVRCLSIL NVVFAIIYGL LAIFLGSSLL ALGSSCSVPL FWCYEISSWG LVILYAGTAF FLRRRADALT
201: IDEGEFGNRN HQGLEMLEAN PLEFTPDVER RVNQGFKAWM ETELTKFLPW TDHEMIVDPE DKSEQVASRS VEVVDIHTVY HQNWVWSVHR LF
101: LFGSSPSLLK ITIVLQEEAI DLLDPVSGKF TGGVRCLSIL NVVFAIIYGL LAIFLGSSLL ALGSSCSVPL FWCYEISSWG LVILYAGTAF FLRRRADALT
201: IDEGEFGNRN HQGLEMLEAN PLEFTPDVER RVNQGFKAWM ETELTKFLPW TDHEMIVDPE DKSEQVASRS VEVVDIHTVY HQNWVWSVHR LF
001: MAIIGDALRQ AFMPKQEYES LREEDRAWIK LQRPTLVSIV AFLCFVIFTC TIVSLKIVFP SNVLKRPFCS DIKLQPLPIY GKARDSDLFP GAFYLTDQET
101: VDYYWMVVFV PSTIIFLVSS VYLVAGIFVA YSAPHRHGFL KVVENNYCAS RRGGVRCLSI LNVVFAIIYG LLAIFLGSSL LTLGSSCSVP LFWCYEISSW
201: GLVILYAGTA FSLRRRAALT IDEGEFGNRN DQGLEMLEAN PLEFTPDVER RVNEGFKAWM GPSLLSSDEE EDEPDFYNEV PNVTHTLSSR QRS
101: VDYYWMVVFV PSTIIFLVSS VYLVAGIFVA YSAPHRHGFL KVVENNYCAS RRGGVRCLSI LNVVFAIIYG LLAIFLGSSL LTLGSSCSVP LFWCYEISSW
201: GLVILYAGTA FSLRRRAALT IDEGEFGNRN DQGLEMLEAN PLEFTPDVER RVNEGFKAWM GPSLLSSDEE EDEPDFYNEV PNVTHTLSSR QRS
Arabidopsis Description
At4g32750 [Source:UniProtKB/TrEMBL;Acc:Q8LA21]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.