Factsheet for Solyc08g068350.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
plasma membrane 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g074170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32750.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT4G32750.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028111	Potato	plasma membrane	97.71	96.76
VIT_04s0008g03740.t01	Wine grape	plasma membrane	71.57	75.26
KRH62026	Soybean	plasma membrane	71.57	75.0
KRH52686	Soybean	cytosol, golgi, plasma membrane	70.92	74.32
AT4G32750.1	Thale cress	plasma membrane	67.97	70.99
Bra034532.1-P	Field mustard	plasma membrane	66.34	69.05
CDY45015	Canola	plasma membrane	66.34	69.05
CDX75281	Canola	endoplasmic reticulum	38.24	68.82
CDY49321	Canola	plasma membrane	65.69	68.37
Bra011377.1-P	Field mustard	plasma membrane	37.91	68.24
GSMUA_Achr10P...	Banana	cytosol, extracellular, plasma membrane	60.78	62.0
Os02t0272400-00	Rice	mitochondrion	53.92	54.46
Zm00001d053306_P001	Maize	mitochondrion	52.94	52.94
TraesCS6B01G229000.1	Wheat	cytosol, plasma membrane, vacuole	48.37	51.93
EES04915	Sorghum	mitochondrion	51.63	51.63
Bra037044.1-P	Field mustard	plasma membrane	29.74	50.28
CDY13500	Canola	golgi, plasma membrane	22.88	44.87
CDX72369	Canola	plasma membrane	42.48	44.52
HORVU6Hr1G051240.4	Barley	cytosol, plasma membrane	43.79	44.08

Protein Annotations

EnsemblPlants:Solyc08g068350.2.1	EnsemblPlantsGene:Solyc08g068350.2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR36060
SEG:seg	TMHMM:TMhelix	UniParc:UPI000276C899	UniProt:K4CM59	MapMan:35.2	:

Description

No Description!

Coordinates

chr8:-:57443629..57450205

Molecular Weight (calculated)

33683.7 Da

IEP (calculated)

4.854

GRAVY (calculated)

0.279

Length

306 amino acids

Sequence
(BLAST)

001: MAIIGDALRQ AFMPKHEYEC LREEDKAFNR LQRPFVICSL ALISLAIIVC TVISLKIVFP VDPARRPFCG DYRIQPLSIN FTNIAASGSE GGSGGGTAGD
101: SDSFPGAFYL TNQEIVDYYW MVVFIPSTFI FAISAVYLIA GIMVAYAAPM RHGCLKVVEN NYCASRRGGV RCLSILNVAF AIVFGLLALF LGSTLLTLGS
201: SCSAPLFWCY EVASWGLVIL YGGTAFFLRR KAAVILDESD FSGRNLGVEM LEANPMEVTP DVERRVNESF KAWMGPSFLS SDEEDESDNY QEVPALSRTN
301: SSRLRQ

Best Arabidopsis Sequence Match ( AT4G32750.1 )
(BLAST)

001: MAIIGDALRQ AFMPKQEYES LREEDRAWIK LQRPTLVSIV AFLCFVIFTC TIVSLKIVFP SNVLKRPFCS DIKLQPLPIY GKARDSDLFP GAFYLTDQET
101: VDYYWMVVFV PSTIIFLVSS VYLVAGIFVA YSAPHRHGFL KVVENNYCAS RRGGVRCLSI LNVVFAIIYG LLAIFLGSSL LTLGSSCSVP LFWCYEISSW
201: GLVILYAGTA FSLRRRAALT IDEGEFGNRN DQGLEMLEAN PLEFTPDVER RVNEGFKAWM GPSLLSSDEE EDEPDFYNEV PNVTHTLSSR QRS

Arabidopsis Description

At4g32750 [Source:UniProtKB/TrEMBL;Acc:Q8LA21]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.