Factsheet for Bra034532.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
plasma membrane 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra020182.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32750.1	Bra002403.1-P	AT5G22290.1	21798944
AT4G32750.1	Bra006619.1-P	AT5G22290.1	21798944
AT4G32750.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45015	Canola	plasma membrane	99.32	99.32
AT4G32750.1	Thale cress	plasma membrane	92.18	92.49
Bra011377.1-P	Field mustard	plasma membrane	48.98	84.71
KRH62026	Soybean	plasma membrane	70.07	70.55
KRH52686	Soybean	cytosol, golgi, plasma membrane	69.39	69.86
VIT_04s0008g03740.t01	Wine grape	plasma membrane	68.03	68.73
Solyc08g068350.2.1	Tomato	plasma membrane	69.05	66.34
Bra037044.1-P	Field mustard	plasma membrane	40.48	65.75
PGSC0003DMT400028111	Potato	plasma membrane	68.71	65.37
GSMUA_Achr10P...	Banana	cytosol, extracellular, plasma membrane	61.9	60.67
Os02t0272400-00	Rice	mitochondrion	56.8	55.12
EES04915	Sorghum	mitochondrion	53.06	50.98
Zm00001d053306_P001	Maize	mitochondrion	53.06	50.98
TraesCS6B01G229000.1	Wheat	cytosol, plasma membrane, vacuole	48.98	50.53
HORVU6Hr1G051240.4	Barley	cytosol, plasma membrane	45.24	43.75

Protein Annotations

EnsemblPlants:Bra034532.1	EnsemblPlants:Bra034532.1-P	EnsemblPlantsGene:Bra034532	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR36060	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002546955	UniProt:M4F0D8	MapMan:35.2

Description

AT4G32750 (E=6e-143) | unknown protein

Coordinates

chrA08:+:13009273..13011164

Molecular Weight (calculated)

33373.4 Da

IEP (calculated)

5.736

GRAVY (calculated)

0.231

Length

294 amino acids

Sequence
(BLAST)

001: MAIIGDALRQ AFMPKQEYES LREEDRAWIK LQRPVLTSIV AFLCFVIFTC TVVSLRIVFP SNVLRRPFCS DVKVQPLPTY GKARDSDLFP GAFYLTDQET
101: VDFYWMVVFV PSTMVFLVSS VYLVAGIFVA YSVPHRHWFL KVVENNYCAS RRGGVRCLSI LNVVFAIIYG LLAIFLGSTL LTLGSSCSMP LFWCYEISSW
201: GLVILYAGTA FCLRRRAALT IDEGEFGNRN HQGLEMLEAN PLVFTPEVER RVNEGFKAWM GPSLLSSDEE EDESEFYNEV PNVTAHTLSS RQRS

Best Arabidopsis Sequence Match ( AT4G32750.1 )
(BLAST)

001: MAIIGDALRQ AFMPKQEYES LREEDRAWIK LQRPTLVSIV AFLCFVIFTC TIVSLKIVFP SNVLKRPFCS DIKLQPLPIY GKARDSDLFP GAFYLTDQET
101: VDYYWMVVFV PSTIIFLVSS VYLVAGIFVA YSAPHRHGFL KVVENNYCAS RRGGVRCLSI LNVVFAIIYG LLAIFLGSSL LTLGSSCSVP LFWCYEISSW
201: GLVILYAGTA FSLRRRAALT IDEGEFGNRN DQGLEMLEAN PLEFTPDVER RVNEGFKAWM GPSLLSSDEE EDEPDFYNEV PNVTHTLSSR QRS

Arabidopsis Description

At4g32750 [Source:UniProtKB/TrEMBL;Acc:Q8LA21]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.