CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 2
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22653
KRH26664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32750.1	KRH22653	AT5G22290.1	21798944
AT4G32750.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52686	Soybean	cytosol, golgi, plasma membrane	95.89	95.89
VIT_04s0008g03740.t01	Wine grape	plasma membrane	73.97	74.23
AT4G32750.1	Thale cress	plasma membrane	72.6	72.35
Solyc08g068350.2.1	Tomato	plasma membrane	75.0	71.57
CDY45015	Canola	plasma membrane	70.89	70.41
Bra034532.1-P	Field mustard	plasma membrane	70.55	70.07
CDY49321	Canola	plasma membrane	70.55	70.07
PGSC0003DMT400028111	Potato	plasma membrane	73.97	69.9
CDX75281	Canola	endoplasmic reticulum	39.73	68.24
Bra011377.1-P	Field mustard	plasma membrane	39.38	67.65
GSMUA_Achr10P...	Banana	cytosol, extracellular, plasma membrane	63.7	62.0
Os02t0272400-00	Rice	mitochondrion	55.48	53.47
Zm00001d053306_P001	Maize	mitochondrion	54.45	51.96
EES04915	Sorghum	mitochondrion	54.45	51.96
TraesCS6B01G229000.1	Wheat	cytosol, plasma membrane, vacuole	48.63	49.82
Bra037044.1-P	Field mustard	plasma membrane	30.82	49.72
CDX72369	Canola	plasma membrane	43.84	43.84
HORVU6Hr1G051240.4	Barley	cytosol, plasma membrane	44.86	43.09
CDY13500	Canola	golgi, plasma membrane	21.92	41.03

Protein Annotations

EMBL:ACUP02002208	EnsemblPlants:KRH62026	EnsemblPlantsGene:GLYMA_04G080900	EntrezGene:100805225	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	PANTHER:PTHR36060	ProteinID:KRH62026	ProteinID:KRH62026.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI00023394DD	UniProt:I1JUS8	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:6795212..6798720

Molecular Weight (calculated)

32402.4 Da

IEP (calculated)

5.802

GRAVY (calculated)

0.191

Length

292 amino acids

Sequence
(BLAST)

001: MAIIGDALRQ AFMPKREYES LREEDKAWGK LQRPVTVASV AVIVLAIAVS TVISLKIVFP SSDGRRAFCV DRRLQPIQIG MKGGSDSDLF PGAFYLTDQE
101: IADYYWMLVF IPSMIVFALS VVYLVAGMTV AYSAPNRHGC LKVVENNYCA SRRGGVRCLS ILNLIFAIVF GGLALFLGST LLTLMSNCSK PLFWCYEIAC
201: WGLVVLYGGT AFFLRRKAAT ILDEGNFSGR NLGLEMLEAS PLEVTPEVER RVNEGFKAWM GPSLLSSDEE DEPDSYDEAP HSTHTNLNRQ RL

Best Arabidopsis Sequence Match ( AT4G32750.1 )
(BLAST)

001: MAIIGDALRQ AFMPKQEYES LREEDRAWIK LQRPTLVSIV AFLCFVIFTC TIVSLKIVFP SNVLKRPFCS DIKLQPLPIY GKARDSDLFP GAFYLTDQET
101: VDYYWMVVFV PSTIIFLVSS VYLVAGIFVA YSAPHRHGFL KVVENNYCAS RRGGVRCLSI LNVVFAIIYG LLAIFLGSSL LTLGSSCSVP LFWCYEISSW
201: GLVILYAGTA FSLRRRAALT IDEGEFGNRN DQGLEMLEAN PLEFTPDVER RVNEGFKAWM GPSLLSSDEE EDEPDFYNEV PNVTHTLSSR QRS

Arabidopsis Description

At4g32750 [Source:UniProtKB/TrEMBL;Acc:Q8LA21]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.