Factsheet for PGSC0003DMT400028111

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
plasma membrane 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015077
PGSC0003DMT400050482

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32750.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT4G32750.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g068350.2.1	Tomato	plasma membrane	96.76	97.71
KRH62026	Soybean	plasma membrane	69.9	73.97
VIT_04s0008g03740.t01	Wine grape	plasma membrane	69.58	73.88
KRH52686	Soybean	cytosol, golgi, plasma membrane	69.26	73.29
AT4G32750.1	Thale cress	plasma membrane	67.64	71.33
CDX75281	Canola	endoplasmic reticulum	38.19	69.41
Bra011377.1-P	Field mustard	plasma membrane	37.86	68.82
Bra034532.1-P	Field mustard	plasma membrane	65.37	68.71
CDY45015	Canola	plasma membrane	65.37	68.71
CDY49321	Canola	plasma membrane	64.72	68.03
GSMUA_Achr10P...	Banana	cytosol, extracellular, plasma membrane	59.87	61.67
Os02t0272400-00	Rice	mitochondrion	53.4	54.46
Zm00001d053306_P001	Maize	mitochondrion	52.43	52.94
TraesCS6B01G229000.1	Wheat	cytosol, plasma membrane, vacuole	47.9	51.93
EES04915	Sorghum	mitochondrion	51.13	51.63
Bra037044.1-P	Field mustard	plasma membrane	28.8	49.17
CDY13500	Canola	golgi, plasma membrane	22.98	45.51
CDX72369	Canola	plasma membrane	42.72	45.21
HORVU6Hr1G051240.4	Barley	cytosol, plasma membrane	43.04	43.75

Protein Annotations

EnsemblPlants:PGSC0003DMT400028111	EnsemblPlantsGene:PGSC0003DMG400010842	EntrezGene:102589985	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR36060	PGSC:PGSC0003DMG400010842	RefSeq:XP_006366214.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000296A98E
UniProt:M1AQQ6	MapMan:35.2	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400010842]

Coordinates

chr8:-:43368324..43376257

Molecular Weight (calculated)

33970.1 Da

IEP (calculated)

4.860

GRAVY (calculated)

0.290

Length

309 amino acids

Sequence
(BLAST)

001: MAIIGEALRQ AFMPKHEYEC LREEDKAFNR LQRPFVICSL TLISLAIIVC TIISLKIVFP VDPARRPFCG DYRIQPLSIN FTNIAASGSE GGGGGTGTGT
101: AGDSDSFPGA FYLTNQEIVD YYWMVVFIPS TFIFAVSAVY LIAGIMVAYA APMRHGCLKV VENNYCASRR GGVRCLSILN VAFAIVFGLL ALFLGSTLLT
201: LGSSCSAPLF WCYEIASWGL VILYGGTAFF LRRKAAVILD ESDFSGRNLG VEMLEANPME VTPDVERRVN ESFKAWMGPS FLSSDEEDES DNYQEVPALS
301: RTISSRLRQ

Best Arabidopsis Sequence Match ( AT4G32750.1 )
(BLAST)

001: MAIIGDALRQ AFMPKQEYES LREEDRAWIK LQRPTLVSIV AFLCFVIFTC TIVSLKIVFP SNVLKRPFCS DIKLQPLPIY GKARDSDLFP GAFYLTDQET
101: VDYYWMVVFV PSTIIFLVSS VYLVAGIFVA YSAPHRHGFL KVVENNYCAS RRGGVRCLSI LNVVFAIIYG LLAIFLGSSL LTLGSSCSVP LFWCYEISSW
201: GLVILYAGTA FSLRRRAALT IDEGEFGNRN DQGLEMLEAN PLEFTPDVER RVNEGFKAWM GPSLLSSDEE EDEPDFYNEV PNVTHTLSSR QRS

Arabidopsis Description

At4g32750 [Source:UniProtKB/TrEMBL;Acc:Q8LA21]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.