Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G051240.4 | Barley | cytosol, plasma membrane | 85.26 | 79.93 |
| Os02t0272400-00 | Rice | mitochondrion | 83.51 | 78.55 |
| EES04915 | Sorghum | mitochondrion | 77.54 | 72.22 |
| Zm00001d053306_P001 | Maize | mitochondrion | 76.14 | 70.92 |
| GSMUA_Achr10P... | Banana | cytosol, extracellular, plasma membrane | 60.0 | 57.0 |
| CDX75281 | Canola | endoplasmic reticulum | 33.33 | 55.88 |
| Bra011377.1-P | Field mustard | plasma membrane | 32.98 | 55.29 |
| VIT_04s0008g03740.t01 | Wine grape | plasma membrane | 51.93 | 50.86 |
| CDY49321 | Canola | plasma membrane | 50.88 | 49.32 |
| AT4G32750.1 | Thale cress | plasma membrane | 50.53 | 49.15 |
| CDY45015 | Canola | plasma membrane | 50.53 | 48.98 |
| Bra034532.1-P | Field mustard | plasma membrane | 50.53 | 48.98 |
| KRH52686 | Soybean | cytosol, golgi, plasma membrane | 49.82 | 48.63 |
| KRH62026 | Soybean | plasma membrane | 49.82 | 48.63 |
| Solyc08g068350.2.1 | Tomato | plasma membrane | 51.93 | 48.37 |
| PGSC0003DMT400028111 | Potato | plasma membrane | 51.93 | 47.9 |
| CDX72369 | Canola | plasma membrane | 37.54 | 36.64 |
| Bra037044.1-P | Field mustard | plasma membrane | 20.35 | 32.04 |
| CDY13500 | Canola | golgi, plasma membrane | 15.79 | 28.85 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G229000.1 | EnsemblPlantsGene:TraesCS6B01G229000 | PANTHER:PTHR36060 | PFscan:PS51257 | SEG:seg | TMHMM:TMhelix |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6B:-:365699811..365732576
Molecular Weight (calculated)
31019.2 Da
IEP (calculated)
4.652
GRAVY (calculated)
0.204
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRGEYEALR DEERALPLAA AAAACVAFAT VAAVGISLGI VFPAEPADRP FCRERRMLEA LPAAASSREE EPEAYRYRGG AFYMTTAEAA DFYWMVVLVP
101: SAVLFAASAA YLVSGISVAY AAPRRHPFIC TVENNFCASR RGGMRCLAIV NAAFALIFGL MAIVFGSMLL ALGSSCSIPL FWCYEIAAWG LVILYGGTAF
201: FLRRKAAAEG DYASHIVGLE MLETTIEVTS EAQRRVNDGF KTWMGPSLLS SDDEEEALDD YIEHNAPAPK ASVQHRKEND LQELT
101: SAVLFAASAA YLVSGISVAY AAPRRHPFIC TVENNFCASR RGGMRCLAIV NAAFALIFGL MAIVFGSMLL ALGSSCSIPL FWCYEIAAWG LVILYGGTAF
201: FLRRKAAAEG DYASHIVGLE MLETTIEVTS EAQRRVNDGF KTWMGPSLLS SDDEEEALDD YIEHNAPAPK ASVQHRKEND LQELT
001: MAIIGDALRQ AFMPKQEYES LREEDRAWIK LQRPTLVSIV AFLCFVIFTC TIVSLKIVFP SNVLKRPFCS DIKLQPLPIY GKARDSDLFP GAFYLTDQET
101: VDYYWMVVFV PSTIIFLVSS VYLVAGIFVA YSAPHRHGFL KVVENNYCAS RRGGVRCLSI LNVVFAIIYG LLAIFLGSSL LTLGSSCSVP LFWCYEISSW
201: GLVILYAGTA FSLRRRAALT IDEGEFGNRN DQGLEMLEAN PLEFTPDVER RVNEGFKAWM GPSLLSSDEE EDEPDFYNEV PNVTHTLSSR QRS
101: VDYYWMVVFV PSTIIFLVSS VYLVAGIFVA YSAPHRHGFL KVVENNYCAS RRGGVRCLSI LNVVFAIIYG LLAIFLGSSL LTLGSSCSVP LFWCYEISSW
201: GLVILYAGTA FSLRRRAALT IDEGEFGNRN DQGLEMLEAN PLEFTPDVER RVNEGFKAWM GPSLLSSDEE EDEPDFYNEV PNVTHTLSSR QRS
Arabidopsis Description
At4g32750 [Source:UniProtKB/TrEMBL;Acc:Q8LA21]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.