Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- endoplasmic reticulum 2
- nucleus 1
- extracellular 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra002403.1-P | |
| Bra006619.1-P | |
| Bra020182.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G32750.1 | Bra002403.1-P | AT5G22290.1 | 21798944 |
| AT4G32750.1 | Bra006619.1-P | AT5G22290.1 | 21798944 |
| AT4G32750.1 | Bra020182.1-P | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75281 | Canola | endoplasmic reticulum | 99.41 | 99.41 |
| AT4G32750.1 | Thale cress | plasma membrane | 86.47 | 50.17 |
| Bra034532.1-P | Field mustard | plasma membrane | 84.71 | 48.98 |
| VIT_04s0008g03740.t01 | Wine grape | plasma membrane | 68.24 | 39.86 |
| KRH52686 | Soybean | cytosol, golgi, plasma membrane | 68.24 | 39.73 |
| KRH62026 | Soybean | plasma membrane | 67.65 | 39.38 |
| Solyc08g068350.2.1 | Tomato | plasma membrane | 68.24 | 37.91 |
| PGSC0003DMT400028111 | Potato | plasma membrane | 68.82 | 37.86 |
| Os02t0272400-00 | Rice | mitochondrion | 61.18 | 34.32 |
| GSMUA_Achr10P... | Banana | cytosol, extracellular, plasma membrane | 60.0 | 34.0 |
| TraesCS6B01G229000.1 | Wheat | cytosol, plasma membrane, vacuole | 55.29 | 32.98 |
| EES04915 | Sorghum | mitochondrion | 57.65 | 32.03 |
| Zm00001d053306_P001 | Maize | mitochondrion | 57.06 | 31.7 |
| Bra037044.1-P | Field mustard | plasma membrane | 32.35 | 30.39 |
| HORVU6Hr1G051240.4 | Barley | cytosol, plasma membrane | 42.35 | 23.68 |
Protein Annotations
| EnsemblPlants:Bra011377.1 | EnsemblPlants:Bra011377.1-P | EnsemblPlantsGene:Bra011377 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR36060 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000254624C | UniProt:M4D4H3 | MapMan:35.2 |
Description
AT4G32750 (E=5e-068) | unknown protein
Coordinates
chrA01:+:2466259..2466997
Molecular Weight (calculated)
19427.1 Da
IEP (calculated)
4.851
GRAVY (calculated)
-0.019
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MFVAYSAPRR HEFLKVVENN YCASKRGGVR CLSILNVVFA IIYCLLAIFL GSSLLIQESS CSVPLFWCYE ISSWCLVILF AGTAFFLRRR AALSIDEGEF
101: ENRSHQGLEM LEANHPFEFT PDVERRVNEG FKAWMGPSLL SSDDEDEDEP EFYNKVPNVT AYTLSSRQRS
101: ENRSHQGLEM LEANHPFEFT PDVERRVNEG FKAWMGPSLL SSDDEDEDEP EFYNKVPNVT AYTLSSRQRS
001: MAIIGDALRQ AFMPKQEYES LREEDRAWIK LQRPTLVSIV AFLCFVIFTC TIVSLKIVFP SNVLKRPFCS DIKLQPLPIY GKARDSDLFP GAFYLTDQET
101: VDYYWMVVFV PSTIIFLVSS VYLVAGIFVA YSAPHRHGFL KVVENNYCAS RRGGVRCLSI LNVVFAIIYG LLAIFLGSSL LTLGSSCSVP LFWCYEISSW
201: GLVILYAGTA FSLRRRAALT IDEGEFGNRN DQGLEMLEAN PLEFTPDVER RVNEGFKAWM GPSLLSSDEE EDEPDFYNEV PNVTHTLSSR QRS
101: VDYYWMVVFV PSTIIFLVSS VYLVAGIFVA YSAPHRHGFL KVVENNYCAS RRGGVRCLSI LNVVFAIIYG LLAIFLGSSL LTLGSSCSVP LFWCYEISSW
201: GLVILYAGTA FSLRRRAALT IDEGEFGNRN DQGLEMLEAN PLEFTPDVER RVNEGFKAWM GPSLLSSDEE EDEPDFYNEV PNVTHTLSSR QRS
Arabidopsis Description
At4g32750 [Source:UniProtKB/TrEMBL;Acc:Q8LA21]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.