CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 6
golgi 6
plasma membrane 5
endoplasmic reticulum 5
vacuole 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92959	Soybean	nucleus	93.37	92.86
KRH01584	Soybean	cytosol	29.47	78.43
KRH70518	Soybean	nucleus	72.56	70.99
VIT_13s0019g00040.t01	Wine grape	extracellular, golgi	69.8	70.06
CDY56564	Canola	cytosol	8.1	69.84
AT3G55260.1	Thale cress	golgi, vacuole	68.14	68.39
CDY02928	Canola	extracellular, golgi	68.51	68.13
CDX76112	Canola	golgi, vacuole	68.14	67.27
Solyc05g054710.2.1	Tomato	extracellular	68.14	67.03
Bra014765.1-P	Field mustard	golgi, vacuole	67.77	66.91
KRH01583	Soybean	golgi, vacuole	43.46	65.56
TraesCS1D01G046100.1	Wheat	extracellular, golgi	62.98	63.1
TraesCS1A01G045400.1	Wheat	unclear	62.98	63.1
EES18909	Sorghum	vacuole	62.8	62.45
TraesCS1B01G058700.1	Wheat	golgi, vacuole	62.8	62.45
Os05t0115900-01	Rice	vacuole	62.06	62.29
GSMUA_Achr5P28320_001	Banana	extracellular, golgi	62.8	62.0
HORVU1Hr1G008250.12	Barley	vacuole	62.62	60.71
Zm00001d035598_P001	Maize	extracellular	58.01	53.57
KRH43642	Soybean	extracellular, golgi	25.78	23.89
KRH43598	Soybean	nucleus	24.31	22.56
KRH13814	Soybean	cytoskeleton, cytosol, vacuole	11.97	20.77

Protein Annotations

KEGG:00511+3.2.1.52	KEGG:00513+3.2.1.52	KEGG:00520+3.2.1.52	KEGG:00531+3.2.1.52	KEGG:00603+3.2.1.52	KEGG:00604+3.2.1.52
EntrezGene:100814818	MapMan:18.1.1.7.1	Gene3D:3.20.20.80	Gene3D:3.30.379.10	EMBL:ACUP02006721	InterPro:Beta_hexosaminidase_sua/sub
EnsemblPlantsGene:GLYMA_10G290900	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0004563	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	GO:GO:0102148	InterPro:Glyco_hydro_20_cat
InterPro:Glycoside_hydrolase_SF	InterPro:HEX_eukaryotic_N	InterPro:Hex-like_dom2	UniProt:I1LFD4	InterPro:IPR029018	EnsemblPlants:KRH36208
ProteinID:KRH36208	ProteinID:KRH36208.1	ProteinID:KRH36209.1	PFAM:PF00728	PFAM:PF14845	PIRSF:PIRSF001093
PRINTS:PR00738	PANTHER:PTHR22600	PANTHER:PTHR22600:SF36	MetaCyc:PWY-6902	MetaCyc:PWY-7822	SUPFAM:SSF51445
SUPFAM:SSF55545	SignalP:SignalP-noTM	UniParc:UPI000233D37D	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:-:50885063..50891742

Molecular Weight (calculated)

61300.3 Da

IEP (calculated)

8.108

GRAVY (calculated)

-0.148

Length

543 amino acids

Sequence
(BLAST)

001: MGLLCIPISS SVLQTLFLFC SAFFVSQALG ARIPQPHKPL PFIWPLPAKF SFGNDSLSVD PALSLSGNGA ASAIVRDAFH RYKGILFKHG DRFSFLRTPR
101: PVYDVTRLSI NVHSHSEELQ LGVDESYNLF VSRAQALSGA GQVTIEANTV FGALRGLETF SQLCSFDYTT KTVQIYKAPW SILDKPRFPY RGLMLDTSRH
201: YLPVDVIKQI IESMSYAKLN VLHWHIIDEQ SFPLEVPTYP NLWKGSYTKW ERYTVEDAYE IVNFSKMRGI NVMAEVDVPG HAASWGIGYP DLWPSPSCKE
301: PLDVSKKFTF DVLSGILTDM RKIFPFELFH LGGDEVNTDC WTNTSTVNKW LRNHNMTAKD AYQYFVLKAQ NIALTKNWSP VNWEETFNTF PTKLHPRTVV
401: HNWLGPGVCP KAVAKGFRCI FSNQGVWYLD HLDVPWDDVY TAEPLEGIRK ASEQKLVLGG EVCMWGETAD TSDVQQTIWP RAAAAAERLW SRRDSTSGNV
501: NIIALPRLHY FRCLLNRRGI PAAPVKNFIA RTAPVGPGSC FEQ

Best Arabidopsis Sequence Match ( AT3G55260.1 )
(BLAST)

001: MSTNLLRLIL LFITLSITSS LSTPSPADSP PYLWPLPAEF SFGNETLSVD PTVTLIVAGN GGGSLIIRAA FDRYMGIIFK HASGRGSLLS RIRFLKMVEY
101: DITSLKIVVH SDSEELQLGV DESYTLMVSK KNEQSIVGAA TIEANTVYGA LRGLETFSQL CAFDYITKSV QIYKAPWYIQ DKPRFGYRGL LIDTSRHYLP
201: IDVIKQIIES MSFAKLNVLH WHIVDEQSFP LETPTYPNLW KGAYSRWERY TVEDASEIVR FAKMRGINVM AEVDVPGHAE SWGTGYPDLW PSLSCREPLD
301: VTKNFTFDVI SGILADMRKI FPFELFHLGG DEVNTDCWKN TTHVKEWLQG RNFTTKDAYK YFVLRAQQIA ISKNWTPVNW EETFSSFGKD LDPRTVIQNW
401: LVSDICQKAV AKGFRCIFSN QGYWYLDHLD VPWEEVYNTE PLNGIEDPSL QKLVIGGEVC MWGETADTSV VLQTIWPRAA AAAERMWSTR EAVSKGNITL
501: TALPRLHYFR CLLNNRGVPA APVDNFYARR PPLGPGSCYA Q

Arabidopsis Description

HEXO1Beta-hexosaminidase [Source:UniProtKB/TrEMBL;Acc:A0A178VFV1]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.