CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 7
golgi 6
plasma membrane 5
endoplasmic reticulum 5
vacuole 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01584	Soybean	cytosol	35.86	97.55
KRH01583	Soybean	golgi, vacuole	53.15	81.94
CDY56564	Canola	cytosol	8.29	73.02
KRH36208	Soybean	nucleus	70.99	72.56
KRG92959	Soybean	nucleus	70.45	71.61
AT3G55260.1	Thale cress	golgi, vacuole	69.73	71.53
VIT_13s0019g00040.t01	Wine grape	extracellular, golgi	69.55	71.35
CDX76112	Canola	golgi, vacuole	69.37	70.0
CDY02928	Canola	extracellular, golgi	68.65	69.78
Bra014765.1-P	Field mustard	golgi, vacuole	68.83	69.45
Solyc05g054710.2.1	Tomato	extracellular	69.01	69.38
Os05t0115900-01	Rice	vacuole	61.8	63.4
TraesCS1D01G046100.1	Wheat	extracellular, golgi	61.8	63.28
EES18909	Sorghum	vacuole	62.16	63.19
TraesCS1A01G045400.1	Wheat	unclear	61.62	63.1
GSMUA_Achr5P28320_001	Banana	extracellular, golgi	62.34	62.91
TraesCS1B01G058700.1	Wheat	golgi, vacuole	61.8	62.82
HORVU1Hr1G008250.12	Barley	vacuole	61.8	61.25
Zm00001d035598_P001	Maize	extracellular	57.12	53.91
KRH43642	Soybean	extracellular, golgi	27.03	25.6
KRH43598	Soybean	nucleus	25.59	24.27
KRH13814	Soybean	cytoskeleton, cytosol, vacuole	11.53	20.45

Protein Annotations

KEGG:00511+3.2.1.52	KEGG:00513+3.2.1.52	KEGG:00520+3.2.1.52	KEGG:00531+3.2.1.52	KEGG:00603+3.2.1.52	KEGG:00604+3.2.1.52
EntrezGene:100790700	MapMan:18.1.1.7.1	Gene3D:3.20.20.80	Gene3D:3.30.379.10	EMBL:ACUP02000781	InterPro:Beta_hexosaminidase_sua/sub
EnsemblPlantsGene:GLYMA_02G095200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0004563	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	GO:GO:0102148	InterPro:Glyco_hydro_20_cat
InterPro:Glycoside_hydrolase_SF	InterPro:HEX_eukaryotic_N	InterPro:Hex-like_dom2	UniProt:I1JDS6	InterPro:IPR029018	EnsemblPlants:KRH70518
ProteinID:KRH70518	ProteinID:KRH70518.1	PFAM:PF00728	PFAM:PF14845	PIRSF:PIRSF001093	PRINTS:PR00738
PANTHER:PTHR22600	PANTHER:PTHR22600:SF36	MetaCyc:PWY-6902	MetaCyc:PWY-7822	SUPFAM:SSF51445	SUPFAM:SSF55545
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000233753C	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:8540423..8550044

Molecular Weight (calculated)

62911.8 Da

IEP (calculated)

5.794

GRAVY (calculated)

-0.147

Length

555 amino acids

Sequence
(BLAST)

001: MFLLFFKPTT SLLFLFFFLI ISVTSLTVPP RGGAPLDSDD DIDSLTYLWP LPAEYTFGVD ALSVDPALTL SVAGNGGGSA ILRAAFDRYR GIVFKHTGVG
101: FSFFRKLRER LVSSVSAFDV DTLKITVRSD NEELQFGVDE SYTLLVPKAK ESSQVTIEAN TVYGALRGLE TFSQLCSFDY TTKTVKIYKA PWSIQDKPRF
201: AYRGLMLDTS RHYLPINVIK QIIESMSYAK LNVLHWHIID EQSFPLEVPT YPNLWKGSYT KWERYTVEDA YEIVNFAKMR GINVMAEVDV PGHAESWGAG
301: YPDLWPSPYC REPLDVSKNF TFDVISGILT DMRKIFPFEL FHLGGDEVNT DCWSSTSHVK EWLQSHNMTT RDAYQYFVLK AQEMAVSKNW SPVNWEETFN
401: TFPSKLHPNT IVHNWLGPGV CPKVVAKGFR CIYSNQGVWY LDHLDVPWDE VYTTEPLQGI HIASEQELVI GGEVCMWGET ADTSNVQQTI WPRAAAAAER
501: LWSQRDSTSQ NITLIALPRL LNFRCLLNRR GVPAAPVTNY YARRAPVGPG SCYDQ

Best Arabidopsis Sequence Match ( AT3G55260.1 )
(BLAST)

001: MSTNLLRLIL LFITLSITSS LSTPSPADSP PYLWPLPAEF SFGNETLSVD PTVTLIVAGN GGGSLIIRAA FDRYMGIIFK HASGRGSLLS RIRFLKMVEY
101: DITSLKIVVH SDSEELQLGV DESYTLMVSK KNEQSIVGAA TIEANTVYGA LRGLETFSQL CAFDYITKSV QIYKAPWYIQ DKPRFGYRGL LIDTSRHYLP
201: IDVIKQIIES MSFAKLNVLH WHIVDEQSFP LETPTYPNLW KGAYSRWERY TVEDASEIVR FAKMRGINVM AEVDVPGHAE SWGTGYPDLW PSLSCREPLD
301: VTKNFTFDVI SGILADMRKI FPFELFHLGG DEVNTDCWKN TTHVKEWLQG RNFTTKDAYK YFVLRAQQIA ISKNWTPVNW EETFSSFGKD LDPRTVIQNW
401: LVSDICQKAV AKGFRCIFSN QGYWYLDHLD VPWEEVYNTE PLNGIEDPSL QKLVIGGEVC MWGETADTSV VLQTIWPRAA AAAERMWSTR EAVSKGNITL
501: TALPRLHYFR CLLNNRGVPA APVDNFYARR PPLGPGSCYA Q

Arabidopsis Description

HEXO1Beta-hexosaminidase [Source:UniProtKB/TrEMBL;Acc:A0A178VFV1]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.