CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70518	Soybean	nucleus	97.55	35.86
KRH36208	Soybean	nucleus	78.43	29.47
KRG92959	Soybean	nucleus	77.45	28.94
VIT_13s0019g00040.t01	Wine grape	extracellular, golgi	75.98	28.65
Solyc05g054710.2.1	Tomato	extracellular	75.0	27.72
TraesCS1A01G045400.1	Wheat	unclear	72.55	27.31
TraesCS1D01G046100.1	Wheat	extracellular, golgi	72.06	27.12
TraesCS1B01G058700.1	Wheat	golgi, vacuole	72.55	27.11
AT3G55260.1	Thale cress	golgi, vacuole	71.08	26.8
Os05t0115900-01	Rice	vacuole	71.08	26.8
CDY02928	Canola	extracellular, golgi	71.08	26.56
EES18909	Sorghum	vacuole	70.59	26.37
Bra014765.1-P	Field mustard	golgi, vacuole	71.08	26.36
CDX76112	Canola	golgi, vacuole	71.08	26.36
HORVU1Hr1G008250.12	Barley	vacuole	71.57	26.07
GSMUA_Achr5P28320_001	Banana	extracellular, golgi	68.14	25.27
Zm00001d035598_P001	Maize	extracellular	56.86	19.73
KRH13814	Soybean	cytoskeleton, cytosol, vacuole	22.55	14.7
KRH43598	Soybean	nucleus	23.04	8.03
KRH43642	Soybean	extracellular, golgi	22.55	7.85
KRH01583	Soybean	golgi, vacuole	0.0	0.0
CDY56564	Canola	cytosol	0.0	0.0

Protein Annotations

KEGG:00511+3.2.1.52	KEGG:00513+3.2.1.52	KEGG:00520+3.2.1.52	KEGG:00531+3.2.1.52	KEGG:00603+3.2.1.52	KEGG:00604+3.2.1.52
MapMan:18.1.1.7.1	Gene3D:3.20.20.80	UniProt:A0A0R0F5I3	EMBL:ACUP02011522	InterPro:Beta_hexosaminidase_sua/sub	EnsemblPlantsGene:GLYMA_18G2862001
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0004563	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_20_cat	InterPro:Glycoside_hydrolase_SF	EnsemblPlants:KRH01584	ProteinID:KRH01584
ProteinID:KRH01584.1	PFAM:PF00728	PRINTS:PR00738	PANTHER:PTHR22600	PANTHER:PTHR22600:SF36	MetaCyc:PWY-6902
MetaCyc:PWY-7822	SUPFAM:SSF51445	UniParc:UPI0006ED898C	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:56644191..56646826

Molecular Weight (calculated)

23200.3 Da

IEP (calculated)

7.464

GRAVY (calculated)

-0.410

Length

204 amino acids

Sequence
(BLAST)

001: CWSSTSHVKE WLQSHNMTTR DAYQYFVLKA QEMAVSKNWS PVNWEETFNT FPSKLHPKTI VHNWLGPGVC PKVVAKGFRC IYSNQGVWYL DHLDVPWDEV
101: YTAEPLQGIH TASEQELVIG GEVCMWGETA DTSNVQQTIW PRAAAAAERL WSQRDSTSQN ITLIALPRLQ NFRCLLNRRG VPAAPVTNYY ARRAPVGPGS
201: CYEQ

Best Arabidopsis Sequence Match ( AT1G65590.1 )
(BLAST)

001: MRGSGAKIAG VLPLFMLFIA GTISAFEDIE RLRIWPLPAQ VSHGGRRMYL SGDFKLVTEG SKYGDASGIL KEGFDRMLGV VRLSHVISGD RNSSGTGGSA
101: LLQGLHVIIS SSTDELEYGA DESYKLVVPS PEKPSYAQLE AKSVYGALHG LQTFSQLCHF NLKKKVIEIL MTPWNIIDQP RFSYRGLLID TSRHYLPLPV
201: IKNVIDSMTY AKLNVLHWHI VDTQSFPLEI PSYPKLWNGA YSSSQRYTFE DAAEIVNYAR RRGIHVLAEI DVPGHALSWG KGYPALWPSK NCQEPLDVSS
301: DFTFKVIDGI LSDFSKIFKF KFVHLGGDEV NTTCWSATPR IAQWLKKHRM SEKEAYQYFV LRAQKIALSH GYEIINWEET FINFGSKLNR KTVVHNWLNT
401: GLVENVTASG LRCIVSNQEF WYLDHIDAPW QGFYANEPFQ NITDKKQQSL VLGGEVCMWG EHIDASDIEQ TIWPRAAAAA ERLWTPYAKL AKNPNNVTTR
501: LAHFRCLLNQ RGVAAAPLVG GGRVVPFEPG SCLAQ

Arabidopsis Description

HEXO3Beta-hexosaminidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7S6]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.