Factsheet for Solyc05g054710.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

extracellular: 22364583
extracellular: 26583031
extracellular: 29876421

msms PMID: 26583031 doi

F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken

Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56564	Canola	cytosol	8.7	76.19
KRH01584	Soybean	cytosol	27.72	75.0
AT3G55260.1	Thale cress	golgi, vacuole	67.93	69.32
VIT_13s0019g00040.t01	Wine grape	extracellular, golgi	67.93	69.32
KRH70518	Soybean	nucleus	69.38	69.01
KRH36208	Soybean	nucleus	67.03	68.14
CDY02928	Canola	extracellular, golgi	66.3	67.03
CDX76112	Canola	golgi, vacuole	66.3	66.55
KRG92959	Soybean	nucleus	65.58	66.3
Bra014765.1-P	Field mustard	golgi, vacuole	65.94	66.18
EES18909	Sorghum	vacuole	63.22	63.92
TraesCS1D01G046100.1	Wheat	extracellular, golgi	62.5	63.65
TraesCS1A01G045400.1	Wheat	unclear	62.32	63.47
KRH01583	Soybean	golgi, vacuole	41.3	63.33
TraesCS1B01G058700.1	Wheat	golgi, vacuole	62.32	63.0
Os05t0115900-01	Rice	vacuole	61.05	62.29
GSMUA_Achr5P28320_001	Banana	extracellular, golgi	61.78	62.0
HORVU1Hr1G008250.12	Barley	vacuole	62.14	61.25
Zm00001d035598_P001	Maize	extracellular	57.97	54.42
Solyc11g008810.1.1	Tomato	extracellular, nucleus	40.58	45.07
Solyc01g081610.2.1	Tomato	extracellular	25.72	24.7

Protein Annotations

KEGG:00511+3.2.1.52	KEGG:00513+3.2.1.52	KEGG:00520+3.2.1.52	KEGG:00531+3.2.1.52	KEGG:00603+3.2.1.52	KEGG:00604+3.2.1.52
MapMan:18.1.1.7.1	Gene3D:3.20.20.80	Gene3D:3.30.379.10	InterPro:Beta_hexosaminidase_sua/sub	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0004563	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	GO:GO:0102148	InterPro:Glyco_hydro_20_cat	InterPro:Glycoside_hydrolase_SF	InterPro:HEX_eukaryotic_N	InterPro:Hex-like_dom2
InterPro:IPR029018	UniProt:K4C2E8	PFAM:PF00728	PFAM:PF14845	PIRSF:PIRSF001093	PRINTS:PR00738
PANTHER:PTHR22600	PANTHER:PTHR22600:SF36	SUPFAM:SSF51445	SUPFAM:SSF55545	EnsemblPlantsGene:Solyc05g054710.2	EnsemblPlants:Solyc05g054710.2.1
UniParc:UPI0002766CB8	SEG:seg	:	:	:	:

Description

Beta-hexosaminidase 1 [Source:Projected from Arabidopsis thaliana (AT3G55260) UniProtKB/Swiss-Prot;Acc:A7WM73]

Coordinates

chr5:-:64565086..64574822

Molecular Weight (calculated)

62637.2 Da

IEP (calculated)

6.006

GRAVY (calculated)

-0.251

Length

552 amino acids

Sequence
(BLAST)

001: MSKISTLNFS QFLLKTFFFS ISIFSLVNAR SIKSTHHHSI ELDESLTYVW PLPAQFTSGN DTLTVDPNLT LDFTGNGGGS GGSVVVEQAF ERYKKIIFKH
101: GAKLAKSGEY FDVNRVTVIV HSDNDELQLG IDESYSLLVT KSNERSIIGG VSIEANSVYG ALRGLETLSQ LCKFDYGVKT VQIRKAPWFI QDKPRFAYRG
201: LLLDTSRHYL PIEIIKQIIE SMSYAKLNVL HWHIIDEESF PLEVPSYPNL WKGAYTKWER YTLEDAIEIV DFAKMRGINV MAEVDVPGHA ESWGAGYPDL
301: WPSPSCKEPL DVSKNYTFDV ISGILADMRK IFPFELFHLG GDEVNTTCWT TTPHVKQWLQ DHKMTAKDAY QYFVLKAQEI AISHNWTPVN WEETFNNFPS
401: KLNPRTVVHN WLVGDVCAKA VASGFRCIYS NQGYWYLDHL DVPWEEVYYA EPLEGIKSIS EQKLILGGEV CMWGETADAS DVQQTIWPRA AAAAERLWSD
501: KETTSSKNTT STTLQRLEYF RCLLTRRGVP AAPVTNFYAR RPPLGPGSCY EQ

Best Arabidopsis Sequence Match ( AT3G55260.1 )
(BLAST)

001: MSTNLLRLIL LFITLSITSS LSTPSPADSP PYLWPLPAEF SFGNETLSVD PTVTLIVAGN GGGSLIIRAA FDRYMGIIFK HASGRGSLLS RIRFLKMVEY
101: DITSLKIVVH SDSEELQLGV DESYTLMVSK KNEQSIVGAA TIEANTVYGA LRGLETFSQL CAFDYITKSV QIYKAPWYIQ DKPRFGYRGL LIDTSRHYLP
201: IDVIKQIIES MSFAKLNVLH WHIVDEQSFP LETPTYPNLW KGAYSRWERY TVEDASEIVR FAKMRGINVM AEVDVPGHAE SWGTGYPDLW PSLSCREPLD
301: VTKNFTFDVI SGILADMRKI FPFELFHLGG DEVNTDCWKN TTHVKEWLQG RNFTTKDAYK YFVLRAQQIA ISKNWTPVNW EETFSSFGKD LDPRTVIQNW
401: LVSDICQKAV AKGFRCIFSN QGYWYLDHLD VPWEEVYNTE PLNGIEDPSL QKLVIGGEVC MWGETADTSV VLQTIWPRAA AAAERMWSTR EAVSKGNITL
501: TALPRLHYFR CLLNNRGVPA APVDNFYARR PPLGPGSCYA Q

Arabidopsis Description

HEXO1Beta-hexosaminidase [Source:UniProtKB/TrEMBL;Acc:A0A178VFV1]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.