CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36208	Soybean	nucleus	92.86	93.37
KRH01584	Soybean	cytosol	28.94	77.45
KRH70518	Soybean	nucleus	71.61	70.45
VIT_13s0019g00040.t01	Wine grape	extracellular, golgi	68.68	69.32
CDY56564	Canola	cytosol	7.88	68.25
AT3G55260.1	Thale cress	golgi, vacuole	67.22	67.84
CDY02928	Canola	extracellular, golgi	67.22	67.22
CDX76112	Canola	golgi, vacuole	67.03	66.55
Bra014765.1-P	Field mustard	golgi, vacuole	66.48	66.0
Solyc05g054710.2.1	Tomato	extracellular	66.3	65.58
KRH01583	Soybean	golgi, vacuole	43.04	65.28
TraesCS1A01G045400.1	Wheat	unclear	61.17	61.62
TraesCS1D01G046100.1	Wheat	extracellular, golgi	61.17	61.62
Os05t0115900-01	Rice	vacuole	60.62	61.18
TraesCS1B01G058700.1	Wheat	golgi, vacuole	60.99	60.99
EES18909	Sorghum	vacuole	60.81	60.81
GSMUA_Achr5P28320_001	Banana	extracellular, golgi	60.99	60.55
HORVU1Hr1G008250.12	Barley	vacuole	61.36	59.82
Zm00001d035598_P001	Maize	extracellular	56.23	52.21
KRH43642	Soybean	extracellular, golgi	25.27	23.55
KRH43598	Soybean	nucleus	23.26	21.71
KRH13814	Soybean	cytoskeleton, cytosol, vacuole	11.36	19.81

Protein Annotations

KEGG:00511+3.2.1.52	KEGG:00513+3.2.1.52	KEGG:00520+3.2.1.52	KEGG:00531+3.2.1.52	KEGG:00603+3.2.1.52	KEGG:00604+3.2.1.52
EntrezGene:100527041	MapMan:18.1.1.7.1	Gene3D:3.20.20.80	Gene3D:3.30.379.10	EMBL:ACUP02012773	InterPro:Beta_hexosaminidase_sua/sub
EnsemblPlantsGene:GLYMA_20G240000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0004563	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	GO:GO:0102148	InterPro:Glyco_hydro_20_cat
InterPro:Glycoside_hydrolase_SF	InterPro:HEX_eukaryotic_N	InterPro:Hex-like_dom2	UniProt:I1NJ56	InterPro:IPR029018	EnsemblPlants:KRG92959
ProteinID:KRG92959	ProteinID:KRG92959.1	PFAM:PF00728	PFAM:PF14845	PIRSF:PIRSF001093	PRINTS:PR00738
PANTHER:PTHR22600	PANTHER:PTHR22600:SF36	MetaCyc:PWY-6902	MetaCyc:PWY-7822	SUPFAM:SSF51445	SUPFAM:SSF55545
SignalP:SignalP-noTM	UniParc:UPI000233DE50	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:47134084..47140408

Molecular Weight (calculated)

61592.6 Da

IEP (calculated)

8.057

GRAVY (calculated)

-0.155

Length

546 amino acids

Sequence
(BLAST)

001: MGLLCIPTSS SVVLQTLFLI CCAFFVSQAL GARIPQPQPH KSLPFIWPLP AKFIFGNDSL SVDPALSLSG NGAASAIVRD AFDRYKGILF KHGDRFSFLR
101: TLRPVYDVTK LSINVHSHSE ELQLGVDESY NLFVSRAQAL SGAGQVTIEA NTVFGALRGL ETFSQLCSFD YTTKTVQIYK APWSIRDKPR FPYRGLMLDT
201: SRHYLPVDVI KQIIESMSYA KLNVLHWHII DEQSFPLEVP TYPNLWKGSY TEWERYTVED AYEIVNFSKM RGINVMAEVD IPGHAASWGV GYPNLWPSPS
301: CKEPLDVSKK FTFDVLSGIL TDMRKIFPFE LFHLGGDEVN TDCWSNTSTV SKWLRNHNMT AKDAYQYFVL KAQNIALTKN WSPVNWEETF NTFPTKLHPR
401: TVVHNWLGPG VCPKAVAKGF RCIFSNQGVW YLNYLNVPWD DVYTAEPLEG IRKASEQKLV LGGEVCMWGE TADTSDIQQT IWPRAAAAAE RLWSQRDSTS
501: GNANIIALRR LHYFRCLLNR RGVPAAPVNN FNARTAPVGP GSCFEQ

Best Arabidopsis Sequence Match ( AT3G55260.1 )
(BLAST)

001: MSTNLLRLIL LFITLSITSS LSTPSPADSP PYLWPLPAEF SFGNETLSVD PTVTLIVAGN GGGSLIIRAA FDRYMGIIFK HASGRGSLLS RIRFLKMVEY
101: DITSLKIVVH SDSEELQLGV DESYTLMVSK KNEQSIVGAA TIEANTVYGA LRGLETFSQL CAFDYITKSV QIYKAPWYIQ DKPRFGYRGL LIDTSRHYLP
201: IDVIKQIIES MSFAKLNVLH WHIVDEQSFP LETPTYPNLW KGAYSRWERY TVEDASEIVR FAKMRGINVM AEVDVPGHAE SWGTGYPDLW PSLSCREPLD
301: VTKNFTFDVI SGILADMRKI FPFELFHLGG DEVNTDCWKN TTHVKEWLQG RNFTTKDAYK YFVLRAQQIA ISKNWTPVNW EETFSSFGKD LDPRTVIQNW
401: LVSDICQKAV AKGFRCIFSN QGYWYLDHLD VPWEEVYNTE PLNGIEDPSL QKLVIGGEVC MWGETADTSV VLQTIWPRAA AAAERMWSTR EAVSKGNITL
501: TALPRLHYFR CLLNNRGVPA APVDNFYARR PPLGPGSCYA Q

Arabidopsis Description

HEXO1Beta-hexosaminidase [Source:UniProtKB/TrEMBL;Acc:A0A178VFV1]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.