Factsheet for TraesCS1D01G046100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 6
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

extracellular: 19786127
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G045400.1	Wheat	unclear	98.71	98.71
TraesCS1B01G058700.1	Wheat	golgi, vacuole	97.23	96.52
HORVU1Hr1G008250.12	Barley	vacuole	95.94	92.86
Os05t0115900-01	Rice	vacuole	88.93	89.09
EES18909	Sorghum	vacuole	80.26	79.67
KRH01584	Soybean	cytosol	27.12	72.06
Zm00001d035598_P001	Maize	extracellular	74.72	68.88
GSMUA_Achr5P28320_001	Banana	extracellular, golgi	68.82	67.82
CDY56564	Canola	cytosol	7.75	66.67
VIT_13s0019g00040.t01	Wine grape	extracellular, golgi	63.47	63.59
AT3G55260.1	Thale cress	golgi, vacuole	63.28	63.4
CDY02928	Canola	extracellular, golgi	63.47	63.0
KRH36208	Soybean	nucleus	63.1	62.98
Solyc05g054710.2.1	Tomato	extracellular	63.65	62.5
CDX76112	Canola	golgi, vacuole	63.28	62.36
Bra014765.1-P	Field mustard	golgi, vacuole	62.92	62.0
KRH70518	Soybean	nucleus	63.28	61.8
KRG92959	Soybean	nucleus	61.62	61.17
KRH01583	Soybean	golgi, vacuole	37.45	56.39
TraesCS1D01G259600.1	Wheat	golgi, vacuole	49.08	50.67
TraesCS3D01G396400.1	Wheat	endoplasmic reticulum, golgi, vacuole	46.68	48.56
TraesCS2D01G201900.1	Wheat	golgi, vacuole	30.26	28.18
TraesCS4D01G242600.1	Wheat	plastid	30.81	27.93

Protein Annotations

KEGG:00511+3.2.1.52	KEGG:00513+3.2.1.52	KEGG:00520+3.2.1.52	KEGG:00531+3.2.1.52	KEGG:00603+3.2.1.52	KEGG:00604+3.2.1.52
MapMan:18.1.1.7.1	Gene3D:3.20.20.80	Gene3D:3.30.379.10	InterPro:Beta_hexosaminidase_sua/sub	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0004563	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
InterPro:Glyco_hydro_20_cat	InterPro:Glycoside_hydrolase_SF	InterPro:HEX_eukaryotic_N	InterPro:Hex-like_dom2	InterPro:IPR029018	PFAM:PF00728
PFAM:PF14845	PIRSF:PIRSF001093	PRINTS:PR00738	PANTHER:PTHR22600	PANTHER:PTHR22600:SF36	SUPFAM:SSF51445
SUPFAM:SSF55545	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS1D01G046100	EnsemblPlants:TraesCS1D01G046100.1	TIGR:cd06562	SEG:seg

Description

No Description!

Coordinates

chr1D:-:25736381..25741700

Molecular Weight (calculated)

60065.4 Da

IEP (calculated)

5.857

GRAVY (calculated)

-0.066

Length

542 amino acids

Sequence
(BLAST)

001: MPPKLLTHLI LALVAVSGAA AARRHPAPAN FTASGNPVYI WPLPKNFTSG TQTLAVDPDL ALDPQGAGGG AAAVAEAFER YRHLIFSPWA HAARPASAGY
101: DVARLTVVVA SADETLELGV DESYTIYIAA AGGANSIVGG ATIEANTIYG AIRGLETFSQ LCVFNYDTKN VEVRYAPWYI QDEPRFAFRG LMLDTSRHYL
201: PVDVIKQVID SMSFSKLNVL HWHIIDEQSF PLEIPSYPNL WKGSYSKSER YTVEDARYIV SYAKKRGIHV MAEIDVPGHA ESWGNGYPKL WPSLSCTEPL
301: DVSSNFTFEV ITGILSDMRK IFPFGLFHLG GDEVYTGCWN LTPHVKQWLD ERNMTTKDAY KYFVLKAQEI AIDLNWIPVN WEETFNSFGG SLNPRTVVHN
401: WLGPGVCPKV VAKGLRCIMS NQGVWYLDHL DVPWEQVYTA EPLAGIDDTA QQKLVLGGEV CMWGETADTS DVQQTIWPRA AAAAERMWSQ LEAISAQDLE
501: TTVLARLHYF RCLLNHRGIA AAPVTNFYAR RPPIGPGSCF VQ

Best Arabidopsis Sequence Match ( AT3G55260.1 )
(BLAST)

001: MSTNLLRLIL LFITLSITSS LSTPSPADSP PYLWPLPAEF SFGNETLSVD PTVTLIVAGN GGGSLIIRAA FDRYMGIIFK HASGRGSLLS RIRFLKMVEY
101: DITSLKIVVH SDSEELQLGV DESYTLMVSK KNEQSIVGAA TIEANTVYGA LRGLETFSQL CAFDYITKSV QIYKAPWYIQ DKPRFGYRGL LIDTSRHYLP
201: IDVIKQIIES MSFAKLNVLH WHIVDEQSFP LETPTYPNLW KGAYSRWERY TVEDASEIVR FAKMRGINVM AEVDVPGHAE SWGTGYPDLW PSLSCREPLD
301: VTKNFTFDVI SGILADMRKI FPFELFHLGG DEVNTDCWKN TTHVKEWLQG RNFTTKDAYK YFVLRAQQIA ISKNWTPVNW EETFSSFGKD LDPRTVIQNW
401: LVSDICQKAV AKGFRCIFSN QGYWYLDHLD VPWEEVYNTE PLNGIEDPSL QKLVIGGEVC MWGETADTSV VLQTIWPRAA AAAERMWSTR EAVSKGNITL
501: TALPRLHYFR CLLNNRGVPA APVDNFYARR PPLGPGSCYA Q

Arabidopsis Description

HEXO1Beta-hexosaminidase [Source:UniProtKB/TrEMBL;Acc:A0A178VFV1]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.