Factsheet for TraesCS4D01G242600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
extracellular 3
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G243000.1	Wheat	plastid	97.99	97.99
TraesCS4A01G065600.1	Wheat	vacuole	91.14	90.98
HORVU4Hr1G067360.4	Barley	plastid	93.81	87.52
Os03t0219400-01	Rice	golgi, vacuole	82.61	81.65
Zm00001d028235_P001	Maize	extracellular, vacuole	80.43	80.3
OQU92989	Sorghum	extracellular, golgi	80.1	78.52
KRH13814	Soybean	cytoskeleton, cytosol, vacuole	33.78	64.54
GSMUA_Achr2P07820_001	Banana	endoplasmic reticulum, extracellular, golgi	56.69	63.6
VIT_13s0320g00040.t01	Wine grape	vacuole	54.68	56.77
KRH43642	Soybean	extracellular, golgi	55.18	56.31
TraesCS2D01G201900.1	Wheat	golgi, vacuole	54.68	56.19
AT1G05590.2	Thale cress	extracellular, golgi	53.68	55.34
CDY10018	Canola	golgi, vacuole	53.85	55.33
PGSC0003DMT400079931	Potato	extracellular	53.18	55.3
Bra032460.1-P	Field mustard	golgi, vacuole	53.18	54.64
Solyc01g081610.2.1	Tomato	extracellular	52.34	54.43
KRH43598	Soybean	nucleus	51.34	52.48
CDX78174	Canola	golgi, vacuole	35.28	51.09
CDY06174	Canola	golgi, vacuole	31.94	49.23
TraesCS3D01G396400.1	Wheat	endoplasmic reticulum, golgi, vacuole	28.93	33.21
TraesCS1D01G259600.1	Wheat	golgi, vacuole	27.93	31.81
TraesCS1D01G046100.1	Wheat	extracellular, golgi	27.93	30.81

Protein Annotations

KEGG:00511+3.2.1.52	KEGG:00513+3.2.1.52	KEGG:00520+3.2.1.52	KEGG:00531+3.2.1.52	KEGG:00603+3.2.1.52	KEGG:00604+3.2.1.52
MapMan:18.1.1.7.1	Gene3D:3.20.20.80	Gene3D:3.30.379.10	InterPro:Beta_hexosaminidase_sua/sub	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0004563	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
InterPro:Glyco_hydro_20_cat	InterPro:Glycoside_hydrolase_SF	InterPro:HEX_eukaryotic_N	InterPro:Hex-like_dom2	InterPro:IPR029018	PFAM:PF00728
PFAM:PF14845	PIRSF:PIRSF001093	PRINTS:PR00738	PANTHER:PTHR22600	PANTHER:PTHR22600:SF27	SUPFAM:SSF51445
SUPFAM:SSF55545	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS4D01G242600	EnsemblPlants:TraesCS4D01G242600.1	TIGR:cd06562	SEG:seg

Description

No Description!

Coordinates

chr4D:+:405305181..405307060

Molecular Weight (calculated)

65527.9 Da

IEP (calculated)

6.899

GRAVY (calculated)

-0.158

Length

598 amino acids

Sequence
(BLAST)

001: MAALPYLAVL LLLLRPAAAP AARPPPPSKP PPPQPHQKVF VWPKPTSISW PSVVYAPLTP TFSIRAVPTH PALRHAIAYY IRHIRAERHT PLVPPANYTL
101: ARVPVRLLTL SVSDAQVPLG PDVDESYTLS VPADSASADI SAATPWGAIR GLETFSQLAW AGGGEAAGGQ SIVPSGIEIS DRPLFTHRGI LLDTARNFYP
201: VRDILHTIRA MAFNKLNVFH WHITDAQSFP IVLPTVPSLA HFGSYSPFMR YTDKDVRRIV NYAAAFGVRV IPEIDMPGHT GSWAGAYPEI VTCANKFWAP
301: TASPALAAEP CTGQLNPLNP KAYRVAQDVL RDLSALFPDP FLHGGADEVN TACWEDDPVV RRFLSEGGTH DQLLELFVNA TRPFMVHELN RTVVYWEDVL
401: LGPKVMVGPT ALPKETTVLQ TWNNGAENTK RIVAAGYRAI VSSAAYYYLD CGHGGWVGND SRYDKQEEEG DGAPLFNDPG GTGGSWCAPF KTWQRVYDYD
501: ILHGLTEEEA NLVLGGEVAL WSEQSDAAVL DGRLWPRAAA AAETLWSGNK GASGRKRYAN ATDRLNDWRH RMVARGIRAE PLQPLWCPLH PGMCNLSQ

Best Arabidopsis Sequence Match ( AT1G05590.1 )
(BLAST)

001: MLTLSKFHVI LIPILFFITL LSPLFSIALP INIWPKPRFL SWPQHKAIAL SPNFTILAPE HQYLSASVTR YHNLIRSENY SPLISYPVKL MKRYTLRNLV
101: VTVTDFSLPL HHGVDESYKL SIPIGSFSAH LLAHSAWGAM RGLETFSQMI WGTSPDLCLP VGIYIQDSPL FGHRGVLLDT SRNYYGVDDI MRTIKAMSAN
201: KLNVFHWHIT DSQSFPLVLP SEPSLAAKGS LGPDMVYTPE DVSKIVQYGF EHGVRVLPEI DTPGHTGSWG EAYPEIVTCA NMFWWPAGKS WEERLASEPG
301: TGQLNPLSPK TYEVVKNVIQ DIVNQFPESF FHGGGDEVIP GCWKTDPAIN SFLSSGGTLS QLLEKYINST LPYIVSQNRT VVYWEDVLLD AQIKADPSVL
401: PKEHTILQTW NNGPENTKRI VAAGYRVIVS SSEFYYLDCG HGGFLGNDSI YDQKESGGGS WCAPFKTWQS IYNYDIADGL LNEEERKLVL GGEVALWSEQ
501: ADSTVLDSRL WPRASALAES LWSGNRDERG VKRCGEAVDR LNLWRYRMVK RGIGAEPIQP LWCLKNPGMC NTVHGALQDQ

Arabidopsis Description

HEXO2Beta-hexosaminidase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYK0]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.