Factsheet for TraesCS1D01G259600.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G270100.1	Wheat	golgi, vacuole	97.71	97.53
TraesCS1A01G259800.1	Wheat	nucleus, unclear	96.38	96.02
HORVU1Hr1G064700.2	Barley	plastid	94.86	86.61
Zm00001d038196_P001	Maize	nucleus	82.48	81.85
KXG22005	Sorghum	golgi, vacuole	82.86	81.77
VIT_00s0340g00040.t01	Wine grape	cytosol, mitochondrion, nucleus	31.05	77.25
Os05t0415700-01	Rice	extracellular	75.81	74.95
TraesCS3D01G396400.1	Wheat	endoplasmic reticulum, golgi, vacuole	72.57	73.13
GSMUA_Achr11P...	Banana	cytosol	36.57	71.38
CDY39278	Canola	cytosol	57.33	71.16
HORVU7Hr1G087370.1	Barley	cytosol	9.33	70.0
Solyc11g008810.1.1	Tomato	extracellular, nucleus	62.67	66.2
PGSC0003DMT400041850	Potato	extracellular	64.38	63.65
AT1G65590.1	Thale cress	vacuole	64.19	62.99
CDY07456	Canola	vacuole	64.0	62.92
Bra004121.1-P	Field mustard	vacuole	64.0	62.92
VIT_00s0220g00180.t01	Wine grape	vacuole	27.62	54.31
TraesCS1D01G046100.1	Wheat	extracellular, golgi	50.67	49.08
VIT_00s0406g00010.t01	Wine grape	cytosol, extracellular, vacuole	11.05	48.74
TraesCS2D01G201900.1	Wheat	golgi, vacuole	32.57	29.38
TraesCS4D01G242600.1	Wheat	plastid	31.81	27.93

Protein Annotations

KEGG:00511+3.2.1.52	KEGG:00513+3.2.1.52	KEGG:00520+3.2.1.52	KEGG:00531+3.2.1.52	KEGG:00603+3.2.1.52	KEGG:00604+3.2.1.52
MapMan:18.1.1.7.1	Gene3D:3.20.20.80	Gene3D:3.30.379.10	InterPro:Beta_hexosaminidase_sua/sub	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0004563	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
InterPro:Glyco_hydro_20_cat	InterPro:Glycoside_hydrolase_SF	InterPro:HEX_eukaryotic_N	InterPro:Hex-like_dom2	InterPro:IPR029018	PFAM:PF00728
PFAM:PF14845	PIRSF:PIRSF001093	PRINTS:PR00738	PANTHER:PTHR22600	PANTHER:PTHR22600:SF36	SUPFAM:SSF51445
SUPFAM:SSF55545	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS1D01G259600	EnsemblPlants:TraesCS1D01G259600.1	TIGR:cd06562	SEG:seg

Description

No Description!

Coordinates

chr1D:+:352411937..352416582

Molecular Weight (calculated)

58224.7 Da

IEP (calculated)

6.825

GRAVY (calculated)

-0.052

Length

525 amino acids

Sequence
(BLAST)

001: MAPALMRLVL ALAVVSCCAA GQPGGRVDLW PMPASVTRGA RTLYVARDLR LSTAGTGYKD GKAILADAFR RMVAVIQLDH AINGSYHGLP VLAGVNVAVR
101: SPDDELKFGV DESYKLTVPA TGNPIYARIE AQTVFGALHA LETFSQLCYF DFVLGVTGLH WAPWTIVDKP RFPYRGLLID TARHYLPVPV IKSVIDSMVY
201: SKLNVLHWHI VDEQSFPLEI PSYPKLSNGA YSYSEKYTIN DAIHIVQYAE KRGVNVLAEI DVPGHAGSWG VGYPSLWPSA TCQQPLDVSN DFTFKVIDGI
301: LSDFSKVFKF KFVHLGGDEV DTSCWTTTPR IKSWLVQHGM NESDAYRYFV LKAQKIAISH GYEIINWEET FNNFGDKLDR KTVVHNWLGG GVAEKVVSAG
401: LRCIVSNQDK WYLDHLDATW EGFYMNEPLT NIYNPEQQKL ILGGEVCMWG EHIDASDIQQ TIWPRAAAAA ERLWTPVEKL AKDTTAVTAR LAHFRCLLNE
501: RGVAAAPLAG YGRTAPSEPG SCVRQ

Best Arabidopsis Sequence Match ( AT1G65590.1 )
(BLAST)

001: MRGSGAKIAG VLPLFMLFIA GTISAFEDIE RLRIWPLPAQ VSHGGRRMYL SGDFKLVTEG SKYGDASGIL KEGFDRMLGV VRLSHVISGD RNSSGTGGSA
101: LLQGLHVIIS SSTDELEYGA DESYKLVVPS PEKPSYAQLE AKSVYGALHG LQTFSQLCHF NLKKKVIEIL MTPWNIIDQP RFSYRGLLID TSRHYLPLPV
201: IKNVIDSMTY AKLNVLHWHI VDTQSFPLEI PSYPKLWNGA YSSSQRYTFE DAAEIVNYAR RRGIHVLAEI DVPGHALSWG KGYPALWPSK NCQEPLDVSS
301: DFTFKVIDGI LSDFSKIFKF KFVHLGGDEV NTTCWSATPR IAQWLKKHRM SEKEAYQYFV LRAQKIALSH GYEIINWEET FINFGSKLNR KTVVHNWLNT
401: GLVENVTASG LRCIVSNQEF WYLDHIDAPW QGFYANEPFQ NITDKKQQSL VLGGEVCMWG EHIDASDIEQ TIWPRAAAAA ERLWTPYAKL AKNPNNVTTR
501: LAHFRCLLNQ RGVAAAPLVG GGRVVPFEPG SCLAQ

Arabidopsis Description

HEXO3Beta-hexosaminidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7S6]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.