Factsheet for VIT_00s0406g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole, cytosol

Predictor Summary:

plastid 2
vacuole 1
peroxisome 1
cytosol 2
plasma membrane 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	32.77	59.09
GSMUA_Achr11P...	Banana	cytosol	36.13	45.26
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, vacuole	37.82	29.41
VIT_00s0340g00040.t01	Wine grape	cytosol, mitochondrion, nucleus	48.74	27.49
TraesCS3D01G396400.1	Wheat	endoplasmic reticulum, golgi, vacuole	50.42	11.52
TraesCS3B01G434500.1	Wheat	golgi, vacuole	50.42	11.52
TraesCS3A01G401600.1	Wheat	endoplasmic reticulum, golgi, vacuole	49.58	11.32
Os05t0415700-01	Rice	extracellular	50.42	11.3
KXG22005	Sorghum	golgi, vacuole	50.42	11.28
Zm00001d038196_P001	Maize	nucleus	49.58	11.15
HORVU3Hr1G090160.4	Barley	endoplasmic reticulum, golgi, vacuole	48.74	11.13
TraesCS1D01G259600.1	Wheat	golgi, vacuole	48.74	11.05
TraesCS1B01G270100.1	Wheat	golgi, vacuole	48.74	11.03
TraesCS1A01G259800.1	Wheat	nucleus, unclear	48.74	11.01
Os01t0891000-01	Rice	extracellular	47.9	10.84
KXG33863	Sorghum	golgi, vacuole	46.22	10.56
Zm00001d012176_P001	Maize	extracellular	46.22	10.46
HORVU1Hr1G064700.2	Barley	plastid	50.42	10.43
VIT_13s0019g00040.t01	Wine grape	extracellular, golgi	37.82	8.32
HORVU7Hr1G087370.1	Barley	cytosol	3.36	5.71
VIT_13s0320g00040.t01	Wine grape	vacuole	21.01	4.34
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, vacuole	0.84	1.28
VIT_00s0220g00180.t01	Wine grape	vacuole	1.68	0.75

Protein Annotations

KEGG:00511+3.2.1.52	KEGG:00513+3.2.1.52	KEGG:00520+3.2.1.52	KEGG:00531+3.2.1.52	KEGG:00603+3.2.1.52	KEGG:00604+3.2.1.52
MapMan:18.1.1.7.1	Gene3D:3.20.20.80	ProteinID:CBI29429	ProteinID:CBI29429.3	UniProt:D7TG06	EMBL:FN595778
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005575	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	InterPro:Glyco_hydro_20_cat	InterPro:Glycoside_hydrolase_SF
PFAM:PF00728	PANTHER:PTHR22600	PANTHER:PTHR22600:SF36	SUPFAM:SSF51445	TMHMM:TMhelix	UniParc:UPI0001BE2F40
ArrayExpress:VIT_00s0406g00010	EnsemblPlantsGene:VIT_00s0406g00010	EnsemblPlants:VIT_00s0406g00010.t01	:	:	:

Description

No Description!

Coordinates

chrUn:-:27759191..27794027

Molecular Weight (calculated)

14105.1 Da

IEP (calculated)

8.377

GRAVY (calculated)

-0.063

Length

119 amino acids

Sequence
(BLAST)

001: MTRDKSPSTK ERILLEISCL ISGCWTETPH IRKWLRQHGL DTSGAYQYFV LRAQKIALSH GYEIINWEET FNDFGSKLSR KTVVHNWYDL IVTCIICIFH
101: YGINFIFCHK YTLHWCGFI

Best Arabidopsis Sequence Match ( AT1G65590.1 )
(BLAST)

001: MRGSGAKIAG VLPLFMLFIA GTISAFEDIE RLRIWPLPAQ VSHGGRRMYL SGDFKLVTEG SKYGDASGIL KEGFDRMLGV VRLSHVISGD RNSSGTGGSA
101: LLQGLHVIIS SSTDELEYGA DESYKLVVPS PEKPSYAQLE AKSVYGALHG LQTFSQLCHF NLKKKVIEIL MTPWNIIDQP RFSYRGLLID TSRHYLPLPV
201: IKNVIDSMTY AKLNVLHWHI VDTQSFPLEI PSYPKLWNGA YSSSQRYTFE DAAEIVNYAR RRGIHVLAEI DVPGHALSWG KGYPALWPSK NCQEPLDVSS
301: DFTFKVIDGI LSDFSKIFKF KFVHLGGDEV NTTCWSATPR IAQWLKKHRM SEKEAYQYFV LRAQKIALSH GYEIINWEET FINFGSKLNR KTVVHNWLNT
401: GLVENVTASG LRCIVSNQEF WYLDHIDAPW QGFYANEPFQ NITDKKQQSL VLGGEVCMWG EHIDASDIEQ TIWPRAAAAA ERLWTPYAKL AKNPNNVTTR
501: LAHFRCLLNQ RGVAAAPLVG GGRVVPFEPG SCLAQ

Arabidopsis Description

HEXO3Beta-hexosaminidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7S6]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.