Factsheet for TraesCS3A01G401600.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, vacuole
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G434500.1	Wheat	golgi, vacuole	97.7	97.7
TraesCS3D01G396400.1	Wheat	endoplasmic reticulum, golgi, vacuole	97.5	97.5
HORVU3Hr1G090160.4	Barley	endoplasmic reticulum, golgi, vacuole	95.39	95.39
KXG33863	Sorghum	golgi, vacuole	83.88	83.88
Os01t0891000-01	Rice	extracellular	83.88	83.08
Zm00001d012176_P001	Maize	extracellular	83.11	82.32
GSMUA_Achr11P...	Banana	cytosol	37.81	73.23
TraesCS1A01G259800.1	Wheat	nucleus, unclear	73.13	72.3
VIT_00s0340g00040.t01	Wine grape	cytosol, mitochondrion, nucleus	28.41	70.14
CDY39278	Canola	cytosol	54.89	67.61
Solyc11g008810.1.1	Tomato	extracellular, nucleus	62.57	65.59
PGSC0003DMT400041850	Potato	extracellular	63.92	62.71
AT1G65590.1	Thale cress	vacuole	62.96	61.31
Bra004121.1-P	Field mustard	vacuole	61.8	60.3
CDY07456	Canola	vacuole	61.8	60.3
VIT_00s0220g00180.t01	Wine grape	vacuole	28.98	56.55
VIT_00s0406g00010.t01	Wine grape	cytosol, extracellular, vacuole	11.32	49.58
TraesCS1A01G045400.1	Wheat	unclear	48.37	46.49
TraesCS2A01G185800.1	Wheat	golgi, vacuole	33.01	29.55
TraesCS4A01G065600.1	Wheat	vacuole	31.67	27.55

Protein Annotations

KEGG:00511+3.2.1.52	KEGG:00513+3.2.1.52	KEGG:00520+3.2.1.52	KEGG:00531+3.2.1.52	KEGG:00603+3.2.1.52	KEGG:00604+3.2.1.52
MapMan:18.1.1.7.1	Gene3D:3.20.20.80	Gene3D:3.30.379.10	InterPro:Beta_hexosaminidase_sua/sub	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0004563	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
InterPro:Glyco_hydro_20_cat	InterPro:Glycoside_hydrolase_SF	InterPro:HEX_eukaryotic_N	InterPro:Hex-like_dom2	InterPro:IPR029018	PFAM:PF00728
PFAM:PF14845	PIRSF:PIRSF001093	PRINTS:PR00738	PFscan:PS51257	PANTHER:PTHR22600	PANTHER:PTHR22600:SF18
SUPFAM:SSF51445	SUPFAM:SSF55545	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS3A01G401600	EnsemblPlants:TraesCS3A01G401600.1	TIGR:cd06562
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:+:647474159..647479123

Molecular Weight (calculated)

58407.4 Da

IEP (calculated)

5.964

GRAVY (calculated)

-0.165

Length

521 amino acids

Sequence
(BLAST)

001: MALALRLLLV FLAIGSCIAA DHIDLWPMPK TVSHGTQRLY VSNNTTMSMA GSKYSDGKAI LKDAFQRMLD LMKLNHNADG ANPSSSLLTG VNIVVLSTQD
101: ELGFEVDESY NLTVPTIGEP LHAQIEAQTV FGALHALQTF SQLCHFEFTS RLIGLNSAPW MISDAPRFPY RGLLIDTSRH YLPLAIIKGV IDAMTYSKLN
201: VLHWHIVDEQ SFPIEIPSYP NLWNGSYSYS ERYTMSDAID IVRYAEKRGV NVLAEIDVPG HARSWGVGYP SLWPSDSCRE PLDVSNNFTF KVIDGILSDF
301: SKVFKFKFVH LGGDEVNTSC WTATPHIKEW LNNNHMNVSD AYRYFVLRAQ KIAISHGYEV INWEETFNNF GDKLDRKTVV HNWLGGDVAP KVVAAGLRCI
401: VSNQDKWYLD HLDATWEGFY LNEPLKGINN TEQQRLVIGG EVCMWGEQID ASDIEQTIWP RAAAAAERLW SPLEQISEDT RSATSRLSRF RCLLNQRGVA
501: AAPLAGDGRT APYEPGPCVR Q

Best Arabidopsis Sequence Match ( AT1G65590.1 )
(BLAST)

001: MRGSGAKIAG VLPLFMLFIA GTISAFEDIE RLRIWPLPAQ VSHGGRRMYL SGDFKLVTEG SKYGDASGIL KEGFDRMLGV VRLSHVISGD RNSSGTGGSA
101: LLQGLHVIIS SSTDELEYGA DESYKLVVPS PEKPSYAQLE AKSVYGALHG LQTFSQLCHF NLKKKVIEIL MTPWNIIDQP RFSYRGLLID TSRHYLPLPV
201: IKNVIDSMTY AKLNVLHWHI VDTQSFPLEI PSYPKLWNGA YSSSQRYTFE DAAEIVNYAR RRGIHVLAEI DVPGHALSWG KGYPALWPSK NCQEPLDVSS
301: DFTFKVIDGI LSDFSKIFKF KFVHLGGDEV NTTCWSATPR IAQWLKKHRM SEKEAYQYFV LRAQKIALSH GYEIINWEET FINFGSKLNR KTVVHNWLNT
401: GLVENVTASG LRCIVSNQEF WYLDHIDAPW QGFYANEPFQ NITDKKQQSL VLGGEVCMWG EHIDASDIEQ TIWPRAAAAA ERLWTPYAKL AKNPNNVTTR
501: LAHFRCLLNQ RGVAAAPLVG GGRVVPFEPG SCLAQ

Arabidopsis Description

HEXO3Beta-hexosaminidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7S6]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.