Factsheet for TraesCS1A01G259800.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 6
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, unclear
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

unclear: 25769308
nucleus: 26228564

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G259600.1	Wheat	golgi, vacuole	96.02	96.38
TraesCS1B01G270100.1	Wheat	golgi, vacuole	95.83	96.01
HORVU1Hr1G064700.2	Barley	plastid	94.12	86.26
KXG22005	Sorghum	golgi, vacuole	83.3	82.52
Zm00001d038196_P001	Maize	nucleus	82.16	81.85
VIT_00s0340g00040.t01	Wine grape	cytosol, mitochondrion, nucleus	30.93	77.25
Os05t0415700-01	Rice	extracellular	75.71	75.14
TraesCS3A01G401600.1	Wheat	endoplasmic reticulum, golgi, vacuole	72.3	73.13
CDY39278	Canola	cytosol	56.74	70.69
GSMUA_Achr11P...	Banana	cytosol	36.05	70.63
HORVU7Hr1G087370.1	Barley	cytosol	9.3	70.0
Solyc11g008810.1.1	Tomato	extracellular, nucleus	62.43	66.2
AT1G65590.1	Thale cress	vacuole	64.14	63.18
CDY07456	Canola	vacuole	63.95	63.11
Bra004121.1-P	Field mustard	vacuole	63.95	63.11
PGSC0003DMT400041850	Potato	extracellular	63.57	63.09
VIT_00s0220g00180.t01	Wine grape	vacuole	27.7	54.68
VIT_00s0406g00010.t01	Wine grape	cytosol, extracellular, vacuole	11.01	48.74
TraesCS1A01G045400.1	Wheat	unclear	49.72	48.34
TraesCS2A01G185800.1	Wheat	golgi, vacuole	32.26	29.21
TraesCS4A01G065600.1	Wheat	vacuole	29.98	26.38

Protein Annotations

KEGG:00511+3.2.1.52	KEGG:00513+3.2.1.52	KEGG:00520+3.2.1.52	KEGG:00531+3.2.1.52	KEGG:00603+3.2.1.52	KEGG:00604+3.2.1.52
MapMan:18.1.1.7.1	Gene3D:3.20.20.80	Gene3D:3.30.379.10	InterPro:Beta_hexosaminidase_sua/sub	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0004563	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
InterPro:Glyco_hydro_20_cat	InterPro:Glycoside_hydrolase_SF	InterPro:HEX_eukaryotic_N	InterPro:Hex-like_dom2	InterPro:IPR029018	PFAM:PF00728
PFAM:PF14845	PIRSF:PIRSF001093	PRINTS:PR00738	PFscan:PS51257	PANTHER:PTHR22600	PANTHER:PTHR22600:SF36
SUPFAM:SSF51445	SUPFAM:SSF55545	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS1A01G259800	EnsemblPlants:TraesCS1A01G259800.1	TIGR:cd06562
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:+:452860327..452865145

Molecular Weight (calculated)

58404.8 Da

IEP (calculated)

6.787

GRAVY (calculated)

-0.052

Length

527 amino acids

Sequence
(BLAST)

001: MAPALMRLAL ALAVAVVGCC AARQPGGRVD LWPMPASVSR GARTLYVARD LKLSTAGSGY KDGKAILADA FRRMVAVIQL DHAINGSYHG LPVLAGVNVA
101: VRSPDDELKF GVDESYKLTV PATGSPLYAR IEAQTVFGAF HALETFSQLC YFDFVLSVTG LHWAPWTIVD KPRFPYRGLL IDTARHYLPV PVIKSVIDSM
201: VYSKLNVLHW HIVDEQPFPL EIPSYPKLSN GAYSYSEKYT INDAIDIVQY AEKRGVNVLA EIDVPGHAGS WGVGYPSLWP SATCQQPLDV SNDFTFKVID
301: GILSDFSKVF KFKFVHLGGD EVDTSCWTTT PRIKSWLVQH GMNESDAYRY FVLKAQKIAI SHGYEIINWE ETFNNFGDKL DRKTVVHNWL GGGVAEKVVS
401: AGLRCIVSNQ DKWYLDHLDA TWEGFYMNEP LTNIYNPEQQ KLILGGEVCM WGEHIDASDI QQTIWPRAAA AAERLWTPVE KLAKDTTAVT ARLAHFRCLL
501: NERGVAAAPL AGYGRTAPSE PGSCVRQ

Best Arabidopsis Sequence Match ( AT1G65590.1 )
(BLAST)

001: MRGSGAKIAG VLPLFMLFIA GTISAFEDIE RLRIWPLPAQ VSHGGRRMYL SGDFKLVTEG SKYGDASGIL KEGFDRMLGV VRLSHVISGD RNSSGTGGSA
101: LLQGLHVIIS SSTDELEYGA DESYKLVVPS PEKPSYAQLE AKSVYGALHG LQTFSQLCHF NLKKKVIEIL MTPWNIIDQP RFSYRGLLID TSRHYLPLPV
201: IKNVIDSMTY AKLNVLHWHI VDTQSFPLEI PSYPKLWNGA YSSSQRYTFE DAAEIVNYAR RRGIHVLAEI DVPGHALSWG KGYPALWPSK NCQEPLDVSS
301: DFTFKVIDGI LSDFSKIFKF KFVHLGGDEV NTTCWSATPR IAQWLKKHRM SEKEAYQYFV LRAQKIALSH GYEIINWEET FINFGSKLNR KTVVHNWLNT
401: GLVENVTASG LRCIVSNQEF WYLDHIDAPW QGFYANEPFQ NITDKKQQSL VLGGEVCMWG EHIDASDIEQ TIWPRAAAAA ERLWTPYAKL AKNPNNVTTR
501: LAHFRCLLNQ RGVAAAPLVG GGRVVPFEPG SCLAQ

Arabidopsis Description

HEXO3Beta-hexosaminidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7S6]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.