Factsheet for VIT_00s0340g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
extracellular 1
cytosol 1
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, vacuole	29.38	79.49
GSMUA_Achr11P...	Banana	cytosol	24.17	77.27
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, vacuole	54.98	75.82
HORVU7Hr1G087370.1	Barley	cytosol	16.59	50.0
VIT_00s0406g00010.t01	Wine grape	cytosol, extracellular, vacuole	27.49	48.74
GSMUA_Achr11P...	Banana	cytosol	21.8	48.42
CDY39278	Canola	cytosol	69.19	34.52
TraesCS1D01G259600.1	Wheat	golgi, vacuole	77.25	31.05
TraesCS1A01G259800.1	Wheat	nucleus, unclear	77.25	30.93
TraesCS1B01G270100.1	Wheat	golgi, vacuole	76.78	30.8
KXG22005	Sorghum	golgi, vacuole	76.3	30.26
Zm00001d038196_P001	Maize	nucleus	75.83	30.25
TraesCS3B01G434500.1	Wheat	golgi, vacuole	70.62	28.6
TraesCS3D01G396400.1	Wheat	endoplasmic reticulum, golgi, vacuole	70.62	28.6
AT1G65590.1	Thale cress	vacuole	72.51	28.6
TraesCS3A01G401600.1	Wheat	endoplasmic reticulum, golgi, vacuole	70.14	28.41
HORVU1Hr1G064700.2	Barley	plastid	77.25	28.35
HORVU3Hr1G090160.4	Barley	endoplasmic reticulum, golgi, vacuole	69.67	28.21
Os05t0415700-01	Rice	extracellular	70.14	27.87
Bra004121.1-P	Field mustard	vacuole	69.67	27.53
Os01t0891000-01	Rice	extracellular	68.25	27.38
CDY07456	Canola	vacuole	69.19	27.34
KXG33863	Sorghum	golgi, vacuole	67.3	27.26
Zm00001d012176_P001	Maize	extracellular	67.77	27.19
VIT_13s0019g00040.t01	Wine grape	extracellular, golgi	40.28	15.71
VIT_13s0320g00040.t01	Wine grape	vacuole	28.44	10.42
VIT_00s0220g00180.t01	Wine grape	vacuole	1.42	1.12

Protein Annotations

KEGG:00511+3.2.1.52	KEGG:00513+3.2.1.52	KEGG:00520+3.2.1.52	KEGG:00531+3.2.1.52	KEGG:00603+3.2.1.52	KEGG:00604+3.2.1.52
EntrezGene:100262386	wikigene:100262386	MapMan:18.1.1.7.1	Gene3D:3.20.20.80	InterPro:Beta_hexosaminidase_sua/sub	ProteinID:CCB45179
ProteinID:CCB45179.1	UniProt:F6GYZ3	EMBL:FN594979	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0004563	GO:GO:0005575	GO:GO:0005618	GO:GO:0005623	GO:GO:0005886	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009505	GO:GO:0015929	GO:GO:0016020	GO:GO:0016787
GO:GO:0030312	InterPro:Glyco_hydro_20_cat	InterPro:Glycoside_hydrolase_SF	EntrezGene:LOC100262386	wikigene:LOC100262386	PFAM:PF00728
PRINTS:PR00738	PANTHER:PTHR22600	PANTHER:PTHR22600:SF36	SUPFAM:SSF51445	TIGR:TC61493	UniParc:UPI000210A91F
ArrayExpress:VIT_00s0340g00040	EnsemblPlantsGene:VIT_00s0340g00040	EnsemblPlants:VIT_00s0340g00040.t01	unigene:Vvi.7718	RefSeq:XP_002265945	RefSeq:XP_002265945.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:24315912..24322465

Molecular Weight (calculated)

23665.0 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.359

Length

211 amino acids

Sequence
(BLAST)

001: MIGHASEKEG FYFLKAKSDE LRQHGLDTSG AYQYFVLRAQ KIALSHGYEI INWEETFNDF GSKLSRKTVV HNWLGGGVAE KVVAAGLRCI VSNQDKWYLD
101: HLDAPWEGFY MNEPLTNITN HQQQKLILGG EVCMWGEHID ASDIEQTIWP RAAAAAERLW SAYDNLAKDP SQVFGRLAHF RCLLNQRGVA AAPLVGPGRV
201: APEEPGSCYK Q

Best Arabidopsis Sequence Match ( AT1G65590.1 )
(BLAST)

001: MRGSGAKIAG VLPLFMLFIA GTISAFEDIE RLRIWPLPAQ VSHGGRRMYL SGDFKLVTEG SKYGDASGIL KEGFDRMLGV VRLSHVISGD RNSSGTGGSA
101: LLQGLHVIIS SSTDELEYGA DESYKLVVPS PEKPSYAQLE AKSVYGALHG LQTFSQLCHF NLKKKVIEIL MTPWNIIDQP RFSYRGLLID TSRHYLPLPV
201: IKNVIDSMTY AKLNVLHWHI VDTQSFPLEI PSYPKLWNGA YSSSQRYTFE DAAEIVNYAR RRGIHVLAEI DVPGHALSWG KGYPALWPSK NCQEPLDVSS
301: DFTFKVIDGI LSDFSKIFKF KFVHLGGDEV NTTCWSATPR IAQWLKKHRM SEKEAYQYFV LRAQKIALSH GYEIINWEET FINFGSKLNR KTVVHNWLNT
401: GLVENVTASG LRCIVSNQEF WYLDHIDAPW QGFYANEPFQ NITDKKQQSL VLGGEVCMWG EHIDASDIEQ TIWPRAAAAA ERLWTPYAKL AKNPNNVTTR
501: LAHFRCLLNQ RGVAAAPLVG GGRVVPFEPG SCLAQ

Arabidopsis Description

HEXO3Beta-hexosaminidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7S6]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.