CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07456	Canola	vacuole	99.05	78.46
Bra004121.1-P	Field mustard	vacuole	98.82	78.28
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, vacuole	13.24	71.79
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, vacuole	25.3	69.93
GSMUA_Achr11P...	Banana	cytosol	10.87	69.7
AT1G65590.1	Thale cress	vacuole	87.94	69.53
VIT_00s0340g00040.t01	Wine grape	cytosol, mitochondrion, nucleus	34.52	69.19
Solyc11g008810.1.1	Tomato	extracellular, nucleus	74.7	63.58
HORVU7Hr1G087370.1	Barley	cytosol	9.93	60.0
PGSC0003DMT400041850	Potato	extracellular	74.47	59.32
KXG22005	Sorghum	golgi, vacuole	72.58	57.71
Zm00001d038196_P001	Maize	nucleus	71.87	57.47
TraesCS1D01G259600.1	Wheat	golgi, vacuole	71.16	57.33
CDY56564	Canola	cytosol	8.51	57.14
TraesCS1B01G270100.1	Wheat	golgi, vacuole	70.92	57.03
TraesCS1A01G259800.1	Wheat	nucleus, unclear	70.69	56.74
Os01t0891000-01	Rice	extracellular	68.79	55.32
Os05t0415700-01	Rice	extracellular	69.27	55.18
HORVU3Hr1G090160.4	Barley	endoplasmic reticulum, golgi, vacuole	67.85	55.09
TraesCS3D01G396400.1	Wheat	endoplasmic reticulum, golgi, vacuole	67.85	55.09
TraesCS3B01G434500.1	Wheat	golgi, vacuole	67.85	55.09
KXG33863	Sorghum	golgi, vacuole	67.61	54.89
TraesCS3A01G401600.1	Wheat	endoplasmic reticulum, golgi, vacuole	67.61	54.89
Zm00001d012176_P001	Maize	extracellular	67.61	54.37
HORVU1Hr1G064700.2	Barley	plastid	71.87	52.87
GSMUA_Achr11P...	Banana	cytosol	11.11	49.47
CDY02928	Canola	extracellular, golgi	50.59	39.19
CDX76112	Canola	golgi, vacuole	50.83	39.09
CDY06174	Canola	golgi, vacuole	22.93	25.0
CDY10018	Canola	golgi, vacuole	34.28	24.91
CDX78174	Canola	golgi, vacuole	24.11	24.7

Protein Annotations

KEGG:00511+3.2.1.52	KEGG:00513+3.2.1.52	KEGG:00520+3.2.1.52	KEGG:00531+3.2.1.52	KEGG:00603+3.2.1.52	KEGG:00604+3.2.1.52
MapMan:18.1.1.7.1	Gene3D:3.20.20.80	Gene3D:3.30.379.10	GO:A0A078HR91	UniProt:A0A078HR91	InterPro:Beta_hexosaminidase_sua/sub
EnsemblPlants:CDY39278	ProteinID:CDY39278	ProteinID:CDY39278.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0004563	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00067510001
InterPro:Glyco_hydro_20_cat	InterPro:Glycoside_hydrolase_SF	InterPro:HEX_eukaryotic_N	InterPro:Hex-like_dom2	InterPro:IPR029018	PFAM:PF00728
PFAM:PF14845	PRINTS:PR00738	PANTHER:PTHR22600	PANTHER:PTHR22600:SF36	MetaCyc:PWY-6902	SUPFAM:SSF51445
SUPFAM:SSF55545	UniParc:UPI0004EE6FA8	SEG:seg	:	:	:

Description

BnaC06g27130DBnaC06g27130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HR91]

Coordinates

chrLK032444:-:166291..169804

Molecular Weight (calculated)

48229.7 Da

IEP (calculated)

7.860

GRAVY (calculated)

-0.313

Length

423 amino acids

Sequence
(BLAST)

001: MVQLEYGADE SYKLVVASRE KPYAQLEAKS VYGALHGLQT FSQLCHFNMK KKVIEILMTP WNITDQPRFS YRGLLIDTSR HYLPLPVMKN VIDSMTYTKL
101: NVLHWHIVDT QSFPLEIPSY PKLWNGAYSP TQRYTFEDAA EIVNYAGRRG IHVLAEIDVP GHALSWGKGY PSLWPSKNCQ EPLDVSSDFT FKVIDGILSD
201: FSKIFKFKFI HLGGDEVNTT CWSTTPRISK WLKKHRKTEA EAYEYFVLRA QKIASSHGYE IINWEETFNN FGNKLNPKTV VHNWLGTGVV GRVTAAGLRC
301: IMSNQDKWYL DHIDTPWQMF YANEPFEMIK DEKRQSLVLG GEVCMWGEHI DASDIQPQTI WPRAAAAAER LWTPYTKLAE NPDKVTTRLA HFRCLLNERG
401: VAAAPLVGGG RVAPFEPGSC LAQ

Best Arabidopsis Sequence Match ( AT1G65590.1 )
(BLAST)

001: MRGSGAKIAG VLPLFMLFIA GTISAFEDIE RLRIWPLPAQ VSHGGRRMYL SGDFKLVTEG SKYGDASGIL KEGFDRMLGV VRLSHVISGD RNSSGTGGSA
101: LLQGLHVIIS SSTDELEYGA DESYKLVVPS PEKPSYAQLE AKSVYGALHG LQTFSQLCHF NLKKKVIEIL MTPWNIIDQP RFSYRGLLID TSRHYLPLPV
201: IKNVIDSMTY AKLNVLHWHI VDTQSFPLEI PSYPKLWNGA YSSSQRYTFE DAAEIVNYAR RRGIHVLAEI DVPGHALSWG KGYPALWPSK NCQEPLDVSS
301: DFTFKVIDGI LSDFSKIFKF KFVHLGGDEV NTTCWSATPR IAQWLKKHRM SEKEAYQYFV LRAQKIALSH GYEIINWEET FINFGSKLNR KTVVHNWLNT
401: GLVENVTASG LRCIVSNQEF WYLDHIDAPW QGFYANEPFQ NITDKKQQSL VLGGEVCMWG EHIDASDIEQ TIWPRAAAAA ERLWTPYAKL AKNPNNVTTR
501: LAHFRCLLNQ RGVAAAPLVG GGRVVPFEPG SCLAQ

Arabidopsis Description

HEXO3Beta-hexosaminidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7S6]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.