CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76112	Canola	golgi, vacuole	95.05	94.36
AT3G55260.1	Thale cress	golgi, vacuole	87.91	88.72
CDY56564	Canola	cytosol	9.71	84.13
KRH01584	Soybean	cytosol	26.56	71.08
VIT_13s0019g00040.t01	Wine grape	extracellular, golgi	68.86	69.5
KRH70518	Soybean	nucleus	69.78	68.65
KRH36208	Soybean	nucleus	68.13	68.51
KRG92959	Soybean	nucleus	67.22	67.22
KRH01583	Soybean	golgi, vacuole	44.14	66.94
Solyc05g054710.2.1	Tomato	extracellular	67.03	66.3
TraesCS1D01G046100.1	Wheat	extracellular, golgi	63.0	63.47
TraesCS1B01G058700.1	Wheat	golgi, vacuole	63.19	63.19
Os05t0115900-01	Rice	vacuole	62.45	63.03
EES18909	Sorghum	vacuole	63.0	63.0
TraesCS1A01G045400.1	Wheat	unclear	62.45	62.92
GSMUA_Achr5P28320_001	Banana	extracellular, golgi	63.37	62.91
HORVU1Hr1G008250.12	Barley	vacuole	62.82	61.25
Zm00001d035598_P001	Maize	extracellular	58.06	53.91
CDY39278	Canola	cytosol	39.19	50.59
CDY07456	Canola	vacuole	42.67	43.63
CDY06174	Canola	golgi, vacuole	21.61	30.41
CDX78174	Canola	golgi, vacuole	22.34	29.54
CDY10018	Canola	golgi, vacuole	27.66	25.95

Protein Annotations

KEGG:00511+3.2.1.52	KEGG:00513+3.2.1.52	KEGG:00520+3.2.1.52	KEGG:00531+3.2.1.52	KEGG:00603+3.2.1.52	KEGG:00604+3.2.1.52
MapMan:18.1.1.7.1	Gene3D:3.20.20.80	Gene3D:3.30.379.10	GO:A0A078ETM7	InterPro:Beta_hexosaminidase_sua/sub	EnsemblPlants:CDY02928
ProteinID:CDY02928	ProteinID:CDY02928.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0004563
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00115192001	InterPro:Glyco_hydro_20_cat
InterPro:Glycoside_hydrolase_SF	InterPro:HEX_eukaryotic_N	InterPro:Hex-like_dom2	InterPro:IPR029018	PFAM:PF00728	PFAM:PF14845
PIRSF:PIRSF001093	PRINTS:PR00738	PANTHER:PTHR22600	PANTHER:PTHR22600:SF36	MetaCyc:PWY-6902	SUPFAM:SSF51445
SUPFAM:SSF55545	SignalP:SignalP-noTM	UniParc:UPI0004EDCE55	SEG:seg	:	:

Description

BnaC04g25580D

Coordinates

chrLK031938:-:545543..549302

Molecular Weight (calculated)

61840.6 Da

IEP (calculated)

6.379

GRAVY (calculated)

-0.189

Length

546 amino acids

Sequence
(BLAST)

001: MALNPPLLHT LLILLSLSTT ITSSLPSQSL QDSPPYLWPL PAKFSSGDET LSVDPSLSLT VAGNGGGSPI VRAAFDRYMG MIFKHAYNRA SSLLTRIRFL
101: SMVEYDITSL KIIVHSDSEE LQLGVDESYT LMVSKNNELS IVGAATIEAN TVYGALRGLE TFSQLCAFDY LTKSVQIYKA PWFIQDKPRF QYRGLLIDTS
201: RHFLPVDVIK QIIESMSFAK LNVLHWHIVD EQSFPFETPT YPNLWKGAYS RWERYTVEDA SEIVRFAKMR GINVMAELDV PGHAESWGTG YPDLWPSPSC
301: REPLDVTKNF TFDVISGILA DMRKIFPFEF FHLGGDEVNT DCWKNTTHVK EWLQGRNFTS KDAYKYFVLR SQQIAISKNW TPVNWEETFS SFGKDLDPRT
401: VVQNWLVSDI CQKAVAKGFR CIFSNQGYWY LDHLDVPWDQ VYNTEPLNGI HDPSQQKLVI GGEVCMWGET ADTSVVLQTI WPRAAAAAER MWSTREAVSK
501: GNITLTALPR LHYFRCLLNN RGVPAAPVDN WYARRPPSGP GSCYAQ

Best Arabidopsis Sequence Match ( AT3G55260.1 )
(BLAST)

001: MSTNLLRLIL LFITLSITSS LSTPSPADSP PYLWPLPAEF SFGNETLSVD PTVTLIVAGN GGGSLIIRAA FDRYMGIIFK HASGRGSLLS RIRFLKMVEY
101: DITSLKIVVH SDSEELQLGV DESYTLMVSK KNEQSIVGAA TIEANTVYGA LRGLETFSQL CAFDYITKSV QIYKAPWYIQ DKPRFGYRGL LIDTSRHYLP
201: IDVIKQIIES MSFAKLNVLH WHIVDEQSFP LETPTYPNLW KGAYSRWERY TVEDASEIVR FAKMRGINVM AEVDVPGHAE SWGTGYPDLW PSLSCREPLD
301: VTKNFTFDVI SGILADMRKI FPFELFHLGG DEVNTDCWKN TTHVKEWLQG RNFTTKDAYK YFVLRAQQIA ISKNWTPVNW EETFSSFGKD LDPRTVIQNW
401: LVSDICQKAV AKGFRCIFSN QGYWYLDHLD VPWEEVYNTE PLNGIEDPSL QKLVIGGEVC MWGETADTSV VLQTIWPRAA AAAERMWSTR EAVSKGNITL
501: TALPRLHYFR CLLNNRGVPA APVDNFYARR PPLGPGSCYA Q

Arabidopsis Description

HEXO1Beta-hexosaminidase [Source:UniProtKB/TrEMBL;Acc:A0A178VFV1]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.