Factsheet for Solyc11g008810.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

nucleus 1
vacuole 1
plastid 2
extracellular 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
nucleus: 25464976
extracellular: 26583031
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26583031 doi

F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken

Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041850	Potato	extracellular	96.18	90.02
GSMUA_Achr11P...	Banana	cytosol	10.06	75.76
CDY39278	Canola	cytosol	63.58	74.7
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, vacuole	22.94	74.51
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, vacuole	10.87	69.23
Bra004121.1-P	Field mustard	vacuole	71.63	66.67
AT1G65590.1	Thale cress	vacuole	71.63	66.54
CDY07456	Canola	vacuole	71.43	66.48
VIT_00s0220g00180.t01	Wine grape	vacuole	35.21	65.54
Zm00001d038196_P001	Maize	nucleus	67.2	63.14
HORVU3Hr1G090160.4	Barley	endoplasmic reticulum, golgi, vacuole	66.0	62.96
TraesCS3D01G396400.1	Wheat	endoplasmic reticulum, golgi, vacuole	65.79	62.76
TraesCS3B01G434500.1	Wheat	golgi, vacuole	65.79	62.76
TraesCS1D01G259600.1	Wheat	golgi, vacuole	66.2	62.67
TraesCS3A01G401600.1	Wheat	endoplasmic reticulum, golgi, vacuole	65.59	62.57
TraesCS1A01G259800.1	Wheat	nucleus, unclear	66.2	62.43
Os01t0891000-01	Rice	extracellular	66.0	62.36
TraesCS1B01G270100.1	Wheat	golgi, vacuole	66.0	62.36
KXG22005	Sorghum	golgi, vacuole	66.6	62.22
Os05t0415700-01	Rice	extracellular	64.79	60.64
KXG33863	Sorghum	golgi, vacuole	62.98	60.08
Zm00001d012176_P001	Maize	extracellular	63.58	60.08
HORVU1Hr1G064700.2	Barley	plastid	67.2	58.09
HORVU7Hr1G087370.1	Barley	cytosol	7.04	50.0
GSMUA_Achr11P...	Banana	cytosol	9.26	48.42
Solyc05g054710.2.1	Tomato	extracellular	45.07	40.58
Solyc01g081610.2.1	Tomato	extracellular	28.97	25.04

Protein Annotations

KEGG:00511+3.2.1.52	KEGG:00513+3.2.1.52	KEGG:00520+3.2.1.52	KEGG:00531+3.2.1.52	KEGG:00603+3.2.1.52	KEGG:00604+3.2.1.52
MapMan:18.1.1.7.1	Gene3D:3.20.20.80	Gene3D:3.30.379.10	InterPro:Beta_hexosaminidase_sua/sub	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0004563	GO:GO:0005575	GO:GO:0005618	GO:GO:0005623	GO:GO:0005886
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009505	GO:GO:0015929	GO:GO:0016020
GO:GO:0016787	GO:GO:0016798	GO:GO:0030312	GO:GO:0102148	InterPro:Glyco_hydro_20_cat	InterPro:Glycoside_hydrolase_SF
InterPro:HEX_eukaryotic_N	InterPro:Hex-like_dom2	InterPro:IPR029018	UniProt:K4D5E1	PFAM:PF00728	PFAM:PF14845
PIRSF:PIRSF001093	PRINTS:PR00738	PANTHER:PTHR22600	PANTHER:PTHR22600:SF36	SUPFAM:SSF51445	SUPFAM:SSF55545
EnsemblPlantsGene:Solyc11g008810.1	EnsemblPlants:Solyc11g008810.1.1	UniParc:UPI0002769366	SEG:seg	:	:

Description

Beta-hexosaminidase [Source:UniProtKB/TrEMBL;Acc:K4D5E1]

Coordinates

chr11:+:2996357..3002941

Molecular Weight (calculated)

55730.0 Da

IEP (calculated)

7.058

GRAVY (calculated)

-0.249

Length

497 amino acids

Sequence
(BLAST)

001: MPLSVSYGHR NLQLSNEFVL KTEGSKYPDA SGILKEGFSR LLDVIKVAHV VDANFSYDGS SPVLKGIQVV VLSPSDELQY GVDESYNLTI PEKGSPAFAY
101: LTAKTVYGAL HGFQTFSQAC HFNLTTRAIE VHQVPWTIVD RPRFSYRGLL IDTSRHYLPL PVILKVIDSM AYAKLNVLHW HIVDTQSFPL EIPSFPKLWN
201: GAYSSSERYT VADASEIVRY AGRRGINVLA ELDVPGHAKS WGIGYPSLWP SKNCQEPLDV SSDFTFKLID GILSDFSKIF KYKFVHLGGD EVDTSCWTLT
301: PRISKWLKQH RFNGTGAYEY FVLRAQKIAL SHGYEIINWE ETFNNFGNKL SPKTIVHNWL GGGVAQQVTA AGLRCIVSNQ DKWYLDHIDT TWQNFYSNEP
401: LTNITKPEQQ RLVMGGEVCM WGEHIDGSNI ETTIWPRAAA AAERLWTAYD NIAKNPEQAA RRLAYFRCLL NQRGVASGPL SGGGRAAPDE PGSCYEQ

Best Arabidopsis Sequence Match ( AT1G65590.1 )
(BLAST)

001: MRGSGAKIAG VLPLFMLFIA GTISAFEDIE RLRIWPLPAQ VSHGGRRMYL SGDFKLVTEG SKYGDASGIL KEGFDRMLGV VRLSHVISGD RNSSGTGGSA
101: LLQGLHVIIS SSTDELEYGA DESYKLVVPS PEKPSYAQLE AKSVYGALHG LQTFSQLCHF NLKKKVIEIL MTPWNIIDQP RFSYRGLLID TSRHYLPLPV
201: IKNVIDSMTY AKLNVLHWHI VDTQSFPLEI PSYPKLWNGA YSSSQRYTFE DAAEIVNYAR RRGIHVLAEI DVPGHALSWG KGYPALWPSK NCQEPLDVSS
301: DFTFKVIDGI LSDFSKIFKF KFVHLGGDEV NTTCWSATPR IAQWLKKHRM SEKEAYQYFV LRAQKIALSH GYEIINWEET FINFGSKLNR KTVVHNWLNT
401: GLVENVTASG LRCIVSNQEF WYLDHIDAPW QGFYANEPFQ NITDKKQQSL VLGGEVCMWG EHIDASDIEQ TIWPRAAAAA ERLWTPYAKL AKNPNNVTTR
501: LAHFRCLLNQ RGVAAAPLVG GGRVVPFEPG SCLAQ

Arabidopsis Description

HEXO3Beta-hexosaminidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7S6]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.