Factsheet for PGSC0003DMT400041850

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 8
plasma membrane 5
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular, plastid, vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g008810.1.1	Tomato	extracellular, nucleus	90.02	96.18
GSMUA_Achr11P...	Banana	cytosol	9.42	75.76
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, vacuole	21.66	75.16
CDY39278	Canola	cytosol	59.32	74.47
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, vacuole	10.17	69.23
VIT_00s0220g00180.t01	Wine grape	vacuole	34.46	68.54
AT1G65590.1	Thale cress	vacuole	68.74	68.22
Bra004121.1-P	Field mustard	vacuole	68.36	67.98
CDY07456	Canola	vacuole	68.17	67.79
Zm00001d038196_P001	Maize	nucleus	64.6	64.84
TraesCS1D01G259600.1	Wheat	golgi, vacuole	63.65	64.38
HORVU3Hr1G090160.4	Barley	endoplasmic reticulum, golgi, vacuole	62.9	64.11
TraesCS3B01G434500.1	Wheat	golgi, vacuole	62.9	64.11
TraesCS3A01G401600.1	Wheat	endoplasmic reticulum, golgi, vacuole	62.71	63.92
TraesCS3D01G396400.1	Wheat	endoplasmic reticulum, golgi, vacuole	62.71	63.92
KXG22005	Sorghum	golgi, vacuole	64.03	63.91
Os01t0891000-01	Rice	extracellular	63.28	63.88
TraesCS1B01G270100.1	Wheat	golgi, vacuole	63.09	63.69
TraesCS1A01G259800.1	Wheat	nucleus, unclear	63.09	63.57
Os05t0415700-01	Rice	extracellular	62.34	62.34
Zm00001d012176_P001	Maize	extracellular	61.21	61.79
KXG33863	Sorghum	golgi, vacuole	60.26	61.42
HORVU1Hr1G064700.2	Barley	plastid	64.41	59.48
HORVU7Hr1G087370.1	Barley	cytosol	6.59	50.0
GSMUA_Achr11P...	Banana	cytosol	8.66	48.42
PGSC0003DMT400079931	Potato	extracellular	28.81	26.61

Protein Annotations

KEGG:00511+3.2.1.52	KEGG:00513+3.2.1.52	KEGG:00520+3.2.1.52	KEGG:00531+3.2.1.52	KEGG:00603+3.2.1.52	KEGG:00604+3.2.1.52
EntrezGene:102599076	MapMan:18.1.1.7.1	Gene3D:3.20.20.80	Gene3D:3.30.379.10	InterPro:Beta_hexosaminidase_sua/sub	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0004563	GO:GO:0005575	GO:GO:0005618	GO:GO:0005623
GO:GO:0005886	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009505	GO:GO:0015929
GO:GO:0016020	GO:GO:0016787	GO:GO:0016798	GO:GO:0030312	GO:GO:0102148	InterPro:Glyco_hydro_20_cat
InterPro:Glycoside_hydrolase_SF	InterPro:HEX_eukaryotic_N	InterPro:Hex-like_dom2	InterPro:IPR029018	UniProt:M1BC44	PFAM:PF00728
PFAM:PF14845	EnsemblPlantsGene:PGSC0003DMG400016240	PGSC:PGSC0003DMG400016240	EnsemblPlants:PGSC0003DMT400041850	PIRSF:PIRSF001093	PRINTS:PR00738
PANTHER:PTHR22600	PANTHER:PTHR22600:SF36	SUPFAM:SSF51445	SUPFAM:SSF55545	SignalP:SignalP-TM	TMHMM:TMhelix
UniParc:UPI00029585D2	RefSeq:XP_006353240.1	RefSeq:XP_006353241.1	SEG:seg	:	:

Description

Beta-hexosaminidase [Source:PGSC_GENE;Acc:PGSC0003DMG400016240]

Coordinates

chr11:-:3026069..3033902

Molecular Weight (calculated)

59580.0 Da

IEP (calculated)

7.248

GRAVY (calculated)

-0.155

Length

531 amino acids

Sequence
(BLAST)

001: MGKFGLRSVL LFAVVVHILV ISVAADIKNL KIWPMPLSVS YGHRNLQLSN EFVLKTEGSK YPDASGILKE GFSRLLDIIK VAHVVDTNFS YDGPSPVLKG
101: IQVVVLSPSD ELQYGVDESY NLTIPEKGNP AFAYLTAKTV YGALHGFQTF SQACHFNLTT RSIEVHQVPW TIVDRPRFSY RGLLIDTSRH YLPLPVILKV
201: IDSMAYAKLN VLHWHIVDTQ SFPLEIPSFP KLWDGAYSSS ERYTVADASE IVRYAGRRGI NVLAELDVPG HAKSWGIGYP SLWPSKNCQE PLDVSSDFTF
301: KLIDGILSDF SKIFKYKFVH LGGDEVDTSC WTLTPRISKW LKQHRLNGTS AYEYFVLRAQ KIALSHGYEI INWEETFNNF GNKLSPKTIV HNWLGGGVAQ
401: QVTAAGLRCI VSNQDKWYLD HIDTTWQDFY SNEPLTNITK PEQQRLVIGG EVCMWGEHID GSNIETTIWP RAAAAAERLW TAYDNIAKNP EQAVRRLAYF
501: RCLLNQRGVA SGPLTGGGRA APDEPGSCYE Q

Best Arabidopsis Sequence Match ( AT1G65590.1 )
(BLAST)

001: MRGSGAKIAG VLPLFMLFIA GTISAFEDIE RLRIWPLPAQ VSHGGRRMYL SGDFKLVTEG SKYGDASGIL KEGFDRMLGV VRLSHVISGD RNSSGTGGSA
101: LLQGLHVIIS SSTDELEYGA DESYKLVVPS PEKPSYAQLE AKSVYGALHG LQTFSQLCHF NLKKKVIEIL MTPWNIIDQP RFSYRGLLID TSRHYLPLPV
201: IKNVIDSMTY AKLNVLHWHI VDTQSFPLEI PSYPKLWNGA YSSSQRYTFE DAAEIVNYAR RRGIHVLAEI DVPGHALSWG KGYPALWPSK NCQEPLDVSS
301: DFTFKVIDGI LSDFSKIFKF KFVHLGGDEV NTTCWSATPR IAQWLKKHRM SEKEAYQYFV LRAQKIALSH GYEIINWEET FINFGSKLNR KTVVHNWLNT
401: GLVENVTASG LRCIVSNQEF WYLDHIDAPW QGFYANEPFQ NITDKKQQSL VLGGEVCMWG EHIDASDIEQ TIWPRAAAAA ERLWTPYAKL AKNPNNVTTR
501: LAHFRCLLNQ RGVAAAPLVG GGRVVPFEPG SCLAQ

Arabidopsis Description

HEXO3Beta-hexosaminidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7S6]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.