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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 5
  • vacuole 8
  • plasma membrane 5
  • golgi 6
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:plastid, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:vacuole
Plant-mPloc:extracellular, plastid, vacuole
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:golgi
extracellular: 29876421
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400079931 Potato extracellular 96.7 96.7
KRH13814 Soybean cytoskeleton, cytosol, vacuole 38.78 71.25
VIT_13s0320g00040.t01 Wine grape vacuole 66.78 66.67
AT1G05590.2 Thale cress extracellular, golgi 62.26 61.72
KRH43642 Soybean extracellular, golgi 62.61 61.43
CDY10018 Canola golgi, vacuole 62.09 61.34
Bra032460.1-P Field mustard golgi, vacuole 61.57 60.82
CDX78174 Canola golgi, vacuole 43.3 60.29
GSMUA_Achr2P07820_001 Banana endoplasmic reticulum, extracellular, golgi 54.26 58.54
KRH43598 Soybean nucleus 58.43 57.44
CDY06174 Canola golgi, vacuole 37.91 56.19
TraesCS2D01G201900.1 Wheat golgi, vacuole 56.87 56.19
TraesCS2A01G185800.1 Wheat golgi, vacuole 55.48 54.81
HORVU2Hr1G037480.2 Barley golgi, vacuole 55.3 54.55
TraesCS2B01G221500.1 Wheat golgi, vacuole 55.13 54.37
Zm00001d021895_P001 Maize extracellular 53.91 53.63
EER99593 Sorghum extracellular, golgi, vacuole 54.26 53.42
Os03t0219400-01 Rice golgi, vacuole 55.3 52.56
TraesCS4D01G242600.1 Wheat plastid 54.43 52.34
Os07t0575500-00 Rice golgi, vacuole 55.48 52.21
Zm00001d028235_P001 Maize extracellular, vacuole 54.09 51.92
TraesCS4B01G243000.1 Wheat plastid 53.91 51.84
OQU92989 Sorghum extracellular, golgi 54.09 50.98
TraesCS4A01G065600.1 Wheat vacuole 52.35 50.25
HORVU4Hr1G067360.4 Barley plastid 53.57 48.05
Solyc11g008810.1.1 Tomato extracellular, nucleus 25.04 28.97
Solyc05g054710.2.1 Tomato extracellular 24.7 25.72
Protein Annotations
KEGG:00511+3.2.1.52KEGG:00513+3.2.1.52KEGG:00520+3.2.1.52KEGG:00531+3.2.1.52KEGG:00603+3.2.1.52KEGG:00604+3.2.1.52
MapMan:18.1.1.7.1Gene3D:3.20.20.80Gene3D:3.30.379.10ProteinID:ABY83274.1InterPro:Beta_hexosaminidase_sua/subUniProt:D3TI69
EMBL:EU244854GO:GO:0003674GO:GO:0003824GO:GO:0004553GO:GO:0004563GO:GO:0005575
GO:GO:0005623GO:GO:0005886GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0015929
GO:GO:0016020GO:GO:0016740GO:GO:0016787GO:GO:0016798GO:GO:0035251GO:GO:0102148
InterPro:Glyco_hydro_20_catInterPro:Glycoside_hydrolase_SFInterPro:HEX_eukaryotic_NInterPro:Hex-like_dom2InterPro:IPR029018PFAM:PF00728
PFAM:PF14845PIRSF:PIRSF001093PRINTS:PR00738PANTHER:PTHR22600PANTHER:PTHR22600:SF27SUPFAM:SSF51445
SUPFAM:SSF55545SignalP:SignalP-noTMEnsemblPlantsGene:Solyc01g081610.2EnsemblPlants:Solyc01g081610.2.1TMHMM:TMhelixUniParc:UPI0001CAF994
SEG:seg:::::
Description
Beta-hexosaminidase 2 [Source:Projected from Arabidopsis thaliana (AT1G05590) UniProtKB/Swiss-Prot;Acc:Q9SYK0]
Coordinates
chr1:-:80803091..80805899
Molecular Weight (calculated)
64026.8 Da
IEP (calculated)
5.803
GRAVY (calculated)
-0.175
Length
575 amino acids
Sequence
(BLAST)
001: MRGEKTFSFF LLLFFILISQ TTATNYPINV WPKPTTFLWP NPKSIFLSTN FTISHPYHRY LTPAVDRYRH LILSEHHRPI ITPAINLTSS IPLQSLVISV
101: SDVTSPLAHG VNESYSLSTP SDGSASAYIS AATVWGAMRG LETFSQLVYG NPTRVSAGVY IHDLPIFTHR GVMLDTSRNF YGVDHLLRLI KAMSMNKLNV
201: FHWHITDSHS FPLVIPSEPE LAGKGAYSNE MMYSPADVQK IVEYGMEHGV RVLPEIDMPA HTGSWAEAYP EIVTCANMFW WPAGSSPALA AEPGTGQLNP
301: SIPKTYEVVK NVIQGTIAMF PDSLFHGGAD EINSDCWNTD LSVQKFVASN GTLSQLLEKF INNTLPEILS LNRTVVYWED VILSGNVKVN PSLLPPQNVI
401: MQTWNNGPNN TKQLVTSGYR VIVSSADYYY LDCGHGSFVG NDSRYDQPPG TDQGNGGSWC GPFKTWETIY NYDITYGLTD EEAPLVIGGE VALWSEQADS
501: TVMDSRIWPR ASAMAEALWS GNRDETGMKR YAEATDRLNE WRYRMVSRGI GAESIQPLWC LKNPGMCNTV HSFTS
Best Arabidopsis Sequence Match ( AT1G05590.1 )
(BLAST)
001: MLTLSKFHVI LIPILFFITL LSPLFSIALP INIWPKPRFL SWPQHKAIAL SPNFTILAPE HQYLSASVTR YHNLIRSENY SPLISYPVKL MKRYTLRNLV
101: VTVTDFSLPL HHGVDESYKL SIPIGSFSAH LLAHSAWGAM RGLETFSQMI WGTSPDLCLP VGIYIQDSPL FGHRGVLLDT SRNYYGVDDI MRTIKAMSAN
201: KLNVFHWHIT DSQSFPLVLP SEPSLAAKGS LGPDMVYTPE DVSKIVQYGF EHGVRVLPEI DTPGHTGSWG EAYPEIVTCA NMFWWPAGKS WEERLASEPG
301: TGQLNPLSPK TYEVVKNVIQ DIVNQFPESF FHGGGDEVIP GCWKTDPAIN SFLSSGGTLS QLLEKYINST LPYIVSQNRT VVYWEDVLLD AQIKADPSVL
401: PKEHTILQTW NNGPENTKRI VAAGYRVIVS SSEFYYLDCG HGGFLGNDSI YDQKESGGGS WCAPFKTWQS IYNYDIADGL LNEEERKLVL GGEVALWSEQ
501: ADSTVLDSRL WPRASALAES LWSGNRDERG VKRCGEAVDR LNLWRYRMVK RGIGAEPIQP LWCLKNPGMC NTVHGALQDQ
Arabidopsis Description
HEXO2Beta-hexosaminidase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYK0]
SUBAcon: [golgi,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.