Factsheet for Zm00001d021895_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	golgi

extracellular: 16281185
extracellular: 20408568

msms PMID: 16281185 doi

S Chivasa, WJ Simon, XL Yu, N Yalpani, AR Slabas

School of Biological and Biomedical Sciences, University of Durham, South Road, Durham DH1 3LE, UK.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99593	Sorghum	extracellular, golgi, vacuole	89.62	88.7
HORVU2Hr1G037480.2	Barley	golgi, vacuole	80.1	79.42
TraesCS2A01G185800.1	Wheat	golgi, vacuole	78.72	78.18
TraesCS2D01G201900.1	Wheat	golgi, vacuole	78.55	78.01
TraesCS2B01G221500.1	Wheat	golgi, vacuole	78.2	77.53
Os07t0575500-00	Rice	golgi, vacuole	78.03	73.81
KRH13814	Soybean	cytoskeleton, cytosol, vacuole	34.6	63.9
VIT_13s0320g00040.t01	Wine grape	vacuole	60.21	60.42
KRH43642	Soybean	extracellular, golgi	58.65	57.85
AT1G05590.2	Thale cress	extracellular, golgi	55.71	55.52
Bra032460.1-P	Field mustard	golgi, vacuole	55.54	55.15
Zm00001d028235_P001	Maize	extracellular, vacuole	57.09	55.09
KRH43598	Soybean	nucleus	55.54	54.87
CDY10018	Canola	golgi, vacuole	54.84	54.47
PGSC0003DMT400079931	Potato	extracellular	54.15	54.43
Solyc01g081610.2.1	Tomato	extracellular	53.63	53.91
CDX78174	Canola	golgi, vacuole	37.2	52.06
CDY06174	Canola	golgi, vacuole	34.08	50.77
Zm00001d038196_P001	Maize	nucleus	29.93	32.7
Zm00001d012176_P001	Maize	extracellular	29.24	32.13
Zm00001d035598_P001	Maize	extracellular	28.2	27.72

Protein Annotations

KEGG:00511+3.2.1.52	KEGG:00513+3.2.1.52	KEGG:00520+3.2.1.52	KEGG:00531+3.2.1.52	KEGG:00603+3.2.1.52	KEGG:00604+3.2.1.52
MapMan:18.1.1.7.1	Gene3D:3.20.20.80	Gene3D:3.30.379.10	UniProt:A0A1D6IHQ3	InterPro:Beta_hexosaminidase_sua/sub	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0004563	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	GO:GO:0016798	GO:GO:0102148	InterPro:Glyco_hydro_20_cat	InterPro:Glycoside_hydrolase_SF	InterPro:HEX_eukaryotic_N
InterPro:Hex-like_dom2	InterPro:IPR029018	ProteinID:ONM59017.1	PFAM:PF00728	PFAM:PF14845	PIRSF:PIRSF001093
PRINTS:PR00738	PANTHER:PTHR22600	PANTHER:PTHR22600:SF27	SUPFAM:SSF51445	SUPFAM:SSF55545	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI0002209F0C	EnsemblPlantsGene:Zm00001d021895	EnsemblPlants:Zm00001d021895_P001	EnsemblPlants:Zm00001d021895_T001	SEG:seg

Description

Beta-hexosaminidase

Coordinates

chr7:-:165558401..165560667

Molecular Weight (calculated)

62892.4 Da

IEP (calculated)

4.955

GRAVY (calculated)

-0.083

Length

578 amino acids

Sequence
(BLAST)

001: MATVLLPLLL LLGSAVTLLT CAGAGASFPV NVWPKPTSMS WAEPHAAVPV SPSFHIVASS GNPYLASAAE RYAKLLFRET YRPIVRPAVN VTAGNALEKL
101: TVAVSDLAAP LQHGVDESYT LEILPTGAAT VTAATAWGAM RGLETFSQLS WRAGRGDLLL VAAGVRVEDR PLYPHRGLML DTGRTYFPVA DILRTIDAMA
201: ANKMNVFHWH ITDSQSFPIV LPSEPSLAEK GAYGENMRYT VEDVERIVEF AMSRGVRVVP EIDSPGHTAS WAGAYPEAVT CAGKFWLPDG DWNHRLAAEP
301: GAGQLNPLAA KTYEVITNVV NDLTSLFPDG FYHAGADEVT PGCWEADPTI QADLERGATL SQLLERYVSA VHPLVVSRNR TAVYWEDVLL DAAVNVSASA
401: IPPATTVLQS WNNGPNNTKL IVQAGYRAIV SSASFYYLDC GHGDFVGNNS IYDDPNSDFD ANGGSWCGPY KTWQRVYDYD IAYGLTPEEA QLVLGGEVAM
501: WTEQVDTTVL DGRVWPRASA MAEALWSGNR DASGRKRYAE ATDRLIDWRQ RMVGRGVRAE PIQPLWCRTR PGMCNAVQ

Best Arabidopsis Sequence Match ( AT1G05590.1 )
(BLAST)

001: MLTLSKFHVI LIPILFFITL LSPLFSIALP INIWPKPRFL SWPQHKAIAL SPNFTILAPE HQYLSASVTR YHNLIRSENY SPLISYPVKL MKRYTLRNLV
101: VTVTDFSLPL HHGVDESYKL SIPIGSFSAH LLAHSAWGAM RGLETFSQMI WGTSPDLCLP VGIYIQDSPL FGHRGVLLDT SRNYYGVDDI MRTIKAMSAN
201: KLNVFHWHIT DSQSFPLVLP SEPSLAAKGS LGPDMVYTPE DVSKIVQYGF EHGVRVLPEI DTPGHTGSWG EAYPEIVTCA NMFWWPAGKS WEERLASEPG
301: TGQLNPLSPK TYEVVKNVIQ DIVNQFPESF FHGGGDEVIP GCWKTDPAIN SFLSSGGTLS QLLEKYINST LPYIVSQNRT VVYWEDVLLD AQIKADPSVL
401: PKEHTILQTW NNGPENTKRI VAAGYRVIVS SSEFYYLDCG HGGFLGNDSI YDQKESGGGS WCAPFKTWQS IYNYDIADGL LNEEERKLVL GGEVALWSEQ
501: ADSTVLDSRL WPRASALAES LWSGNRDERG VKRCGEAVDR LNLWRYRMVK RGIGAEPIQP LWCLKNPGMC NTVHGALQDQ

Arabidopsis Description

HEXO2Beta-hexosaminidase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYK0]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.