CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42209	Soybean	endoplasmic reticulum	80.29	94.89
PGSC0003DMT400045627	Potato	nucleus	71.63	69.63
PGSC0003DMT400076497	Potato	nucleus	66.83	67.8
KXG37189	Sorghum	nucleus	64.42	67.34
Zm00001d034768_P005	Maize	nucleus	66.35	67.32
Os03t0836200-03	Rice	nucleus	66.35	67.32
KXG24163	Sorghum	nucleus	66.83	63.76
Solyc10g047130.1.1	Tomato	nucleus	71.63	62.34
Bra025205.1-P	Field mustard	nucleus	68.75	61.64
CDX83617	Canola	nucleus	68.27	61.21
TraesCS4A01G355700.1	Wheat	nucleus	61.54	60.66
CDY13632	Canola	nucleus	69.23	60.25
TraesCS5B01G516400.1	Wheat	nucleus	62.02	58.9
CDY52166	Canola	nucleus	68.75	58.85
CDY48990	Canola	nucleus	68.75	58.85
Bra032933.1-P	Field mustard	nucleus	68.75	58.85
TraesCS5D01G516500.1	Wheat	nucleus	62.5	58.56
HORVU7Hr1G078140.5	Barley	nucleus	63.46	57.39
TraesCS7D01G323600.1	Wheat	nucleus	63.46	57.39
TraesCS7B01G227500.2	Wheat	nucleus	63.46	57.39
AT3G26420.1	Thale cress	nucleus	66.35	56.33
TraesCS7A01G326800.1	Wheat	nucleus	63.46	55.7
VIT_18s0166g00180.t01	Wine grape	mitochondrion	74.04	54.04
Solyc01g104840.2.1	Tomato	nucleus	50.0	46.64
KRH29453	Soybean	nucleus	29.33	43.57
GSMUA_Achr5P26170_001	Banana	nucleus, peroxisome, plasma membrane	34.62	42.86
KRH51528	Soybean	nucleus	37.5	42.86
KRH29451	Soybean	nucleus	35.1	42.69
KRH29454	Soybean	nucleus	34.62	42.35
HORVU5Hr1G118010.1	Barley	mitochondrion, nucleus	63.46	42.31
KRH29452	Soybean	nucleus	30.29	40.38
GSMUA_Achr3P22540_001	Banana	nucleus, peroxisome, plasma membrane	39.42	40.0
KRH60842	Soybean	mitochondrion	35.58	40.0
GSMUA_Achr8P07840_001	Banana	mitochondrion, nucleus, plasma membrane	33.65	36.65
KRH10291	Soybean	nucleus	12.02	33.78
KRH17905	Soybean	cytosol, mitochondrion, nucleus	13.46	33.73
KRG97345	Soybean	mitochondrion	22.6	33.33
KRG90774	Soybean	nucleus	42.79	31.9
KRH23034	Soybean	mitochondrion	12.98	31.4
KRG95817	Soybean	mitochondrion	20.19	30.22
KRH67959	Soybean	mitochondrion	18.75	30.0
KRH67547	Soybean	mitochondrion	19.71	29.5
KRH27720	Soybean	endoplasmic reticulum, mitochondrion	12.98	27.84
KRH77758	Soybean	mitochondrion	14.9	27.43
KRH35987	Soybean	nucleus	37.5	26.99
KRH50325	Soybean	vacuole	17.31	25.71
KRH31570	Soybean	mitochondrion	17.79	25.52
KRH25927	Soybean	mitochondrion, plastid	15.87	22.76
KRH55574	Soybean	mitochondrion, plastid	15.87	22.76
KRH24832	Soybean	endoplasmic reticulum	15.38	22.7
KRH01278	Soybean	mitochondrion, nucleus, plastid	25.0	21.31
KRH24829	Soybean	mitochondrion	14.9	21.23
KRH03133	Soybean	nucleus	27.4	20.73
KRH45033	Soybean	nucleus, plastid	22.6	19.18
KRH56813	Soybean	mitochondrion	25.0	18.98
KRH09475	Soybean	plastid	14.42	16.67
KRH40931	Soybean	mitochondrion	16.83	15.15
KRH38934	Soybean	plastid	9.13	12.34
KRH54698	Soybean	plastid	35.1	10.83
KRG92035	Soybean	plastid	16.35	8.72

Protein Annotations

EntrezGene:100815224	MapMan:16.7.2	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EMBL:ACUP02003252	EMBL:BT097846
UniProt:C6TJJ8	EnsemblPlantsGene:GLYMA_05G121100	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0008270	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	EnsemblPlants:KRH58335	ProteinID:KRH58335
ProteinID:KRH58335.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158
PANTHER:PTHR45429	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928
SUPFAM:SSF57756	UniParc:UPI0001B16727	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr5:+:31400610..31404065

Molecular Weight (calculated)

22752.9 Da

IEP (calculated)

9.367

GRAVY (calculated)

-1.269

Length

208 amino acids

Sequence
(BLAST)

001: MSDVEEFRCF IGGLAWSTSD RKLKDTFEKF GKLIEAKVVV DKFSGRSRGF GFVTFDDKKA MDEAIDAMNG IDLDGRTITV DRAQPQQGST RDDGDRYRER
101: GRDRDRNRDY GGGGGRGSNG GECFKCGKPG HFARECPGEG SRGGRYGGRE SRYGGSSGGG YGPDRNADRS SGGRSRDGGS HGDSGSDRYY RDRSGPYERE
201: RRGSGGFR

Best Arabidopsis Sequence Match ( AT3G26420.1 )
(BLAST)

001: MSEDPEYRCF IGGLAWTTSD RGLRDAFEKY GHLVEAKVVL DKFSGRSRGF GFITFDEKKA MDEAIAAMNG MDLDGRTITV DKAQPHQGGA GRDNDGDRGR
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH

Arabidopsis Description

RZ1AGlycine-rich RNA-binding protein RZ1A [Source:UniProtKB/Swiss-Prot;Acc:Q9LIN3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.