CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24832	Soybean	endoplasmic reticulum	58.22	60.28
KRH40931	Soybean	mitochondrion	85.62	54.11
AT5G59865.1	Thale cress	mitochondrion, plastid	39.73	51.33
GSMUA_Achr2P19090_001	Banana	mitochondrion	36.99	50.94
VIT_05s0094g00380.t01	Wine grape	mitochondrion	37.67	50.0
TraesCS1A01G405700.1	Wheat	mitochondrion	36.3	47.75
TraesCS3A01G534200.1	Wheat	mitochondrion	35.62	47.71
TraesCS3D01G539400.1	Wheat	mitochondrion	34.93	46.79
TraesCS3B01G610900.1	Wheat	mitochondrion	34.93	46.79
Os01t0974701-01	Rice	mitochondrion	36.99	46.55
CDY31588	Canola	nucleus	24.66	46.15
HORVU3Hr1G116710.1	Barley	mitochondrion	36.3	43.44
Zm00001d041949_P001	Maize	mitochondrion	29.45	39.81
EES02151	Sorghum	mitochondrion, plastid	37.67	37.67
KRH23034	Soybean	mitochondrion	20.55	34.88
PGSC0003DMT400070114	Potato	endoplasmic reticulum, extracellular	34.93	34.23
CDX71070	Canola	mitochondrion	33.56	32.24
KRH10291	Soybean	nucleus	15.75	31.08
KRH17905	Soybean	cytosol, mitochondrion, nucleus	15.75	27.71
KRH67959	Soybean	mitochondrion	24.66	27.69
KRH77758	Soybean	mitochondrion	20.55	26.55
Bra025674.1-P	Field mustard	mitochondrion	26.03	26.21
KRH27720	Soybean	endoplasmic reticulum, mitochondrion	17.12	25.77
KRH29453	Soybean	nucleus	24.66	25.71
KRH67547	Soybean	mitochondrion	22.6	23.74
KRH29452	Soybean	nucleus	25.34	23.72
KRG97345	Soybean	mitochondrion	22.6	23.4
KRG95817	Soybean	mitochondrion	21.92	23.02
KRH29451	Soybean	nucleus	26.71	22.81
KRH29454	Soybean	nucleus	26.03	22.35
KRH55574	Soybean	mitochondrion, plastid	21.92	22.07
KRH51528	Soybean	nucleus	26.71	21.43
KRH60842	Soybean	mitochondrion	26.71	21.08
KRH25927	Soybean	mitochondrion, plastid	20.55	20.69
KRH31570	Soybean	mitochondrion	19.86	20.0
KRH50325	Soybean	vacuole	18.49	19.29
KRH09475	Soybean	plastid	22.6	18.33
KRH42209	Soybean	endoplasmic reticulum	21.23	17.61
Solyc10g081180.1.1	Tomato	nucleus	26.03	17.27
KRH01278	Soybean	mitochondrion, nucleus, plastid	27.4	16.39
KRH45033	Soybean	nucleus, plastid	26.71	15.92
Bra008020.1-P	Field mustard	endoplasmic reticulum	21.92	15.38
KRH58335	Soybean	nucleus	21.23	14.9
Bra008142.1-P	Field mustard	mitochondrion	25.34	14.02
KRH38934	Soybean	plastid	13.7	12.99
Bra015926.1-P	Field mustard	mitochondrion	25.34	12.98
KRH56813	Soybean	mitochondrion	23.97	12.77
KRH03133	Soybean	nucleus	23.97	12.73
KRG92035	Soybean	plastid	31.51	11.79
KRG90774	Soybean	nucleus	19.18	10.04
KRH35987	Soybean	nucleus	13.01	6.57
KRH54698	Soybean	plastid	20.55	4.45

Protein Annotations

EntrezGene:100306540	Gene3D:3.30.70.330	MapMan:35.1	EMBL:ACUP02007187	EMBL:BT090684	UniProt:C6SZT2
EnsemblPlantsGene:GLYMA_12G065000	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	EnsemblPlants:KRH24829	ProteinID:KRH24829	ProteinID:KRH24829.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR45502	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0001B1518F	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:4789541..4792194

Molecular Weight (calculated)

16408.9 Da

IEP (calculated)

10.143

GRAVY (calculated)

-0.123

Length

146 amino acids

Sequence
(BLAST)

001: MYVKTACGFT HSLRKMLYCV SDINLKFTVM QITSALVNGS ALRFHLPRFL CVRHHSSTKL FVTGLSYDTN EPILRDAFGQ HGEIIEVKVI CDHVTGKSRG
101: YGFVRFVSET TAAAARKEMN GQILDGRRIR VSYAHKGERL SLPNNS

Best Arabidopsis Sequence Match ( AT5G59865.1 )
(BLAST)

001: MFSSLFVRCN SITSPLRCFA IRGSCSKLFV GGLSYDTNEP VLKNEFEKYG EIIEVKVICD HKSGKSKGYG FVLFDSEEAA ASALASMDNQ LLEGRNIRVE
101: YAQPKRSLYQ NPK

Arabidopsis Description

Glycine-rich RNA-binding-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BEY1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.