Factsheet for Bra008142.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49123	Canola	mitochondrion	98.48	97.74
Bra015926.1-P	Field mustard	mitochondrion	92.05	85.26
AT1G74230.1	Thale cress	mitochondrion, plastid	86.74	79.24
Bra037056.1-P	Field mustard	mitochondrion	31.06	54.67
Bra013997.1-P	Field mustard	mitochondrion	29.17	53.1
Bra030284.1-P	Field mustard	nucleus	31.06	48.81
Bra035944.1-P	Field mustard	plastid	48.11	48.29
Solyc10g081180.1.1	Tomato	nucleus	39.39	47.27
Bra031210.1-P	Field mustard	nucleus	29.55	46.43
Bra011869.1-P	Field mustard	cytosol	28.41	46.3
Bra010693.1-P	Field mustard	nucleus	28.79	46.06
Bra001972.1-P	Field mustard	nucleus	28.41	45.73
Bra012986.1-P	Field mustard	mitochondrion	51.14	44.26
PGSC0003DMT400072235	Potato	mitochondrion, nucleus	43.56	43.73
Bra025674.1-P	Field mustard	mitochondrion	23.11	42.07
Bra008020.1-P	Field mustard	endoplasmic reticulum	32.58	41.35
Bra014000.1-P	Field mustard	mitochondrion	30.68	36.49
Bra028739.1-P	Field mustard	mitochondrion	19.7	35.62
Bra002976.1-P	Field mustard	mitochondrion	14.02	35.58
GSMUA_Achr2P19090_001	Banana	mitochondrion	14.02	34.91
TraesCS1A01G405700.1	Wheat	mitochondrion	14.02	33.33
TraesCS3A01G534200.1	Wheat	mitochondrion	13.26	32.11
TraesCS3B01G610900.1	Wheat	mitochondrion	12.88	31.19
Bra029692.1-P	Field mustard	mitochondrion	16.67	30.77
TraesCS3D01G539400.1	Wheat	mitochondrion	12.5	30.28
Bra020279.1-P	Field mustard	mitochondrion	12.5	30.0
VIT_05s0094g00380.t01	Wine grape	mitochondrion	12.5	30.0
Bra005189.1-P	Field mustard	plastid	16.29	29.86
HORVU3Hr1G116710.1	Barley	mitochondrion	13.26	28.69
Os01t0974701-01	Rice	mitochondrion	12.5	28.45
Bra000516.1-P	Field mustard	mitochondrion	14.39	28.36
Zm00001d041949_P001	Maize	mitochondrion	10.98	26.85
Bra029020.1-P	Field mustard	plastid	15.53	26.8
KRH24829	Soybean	mitochondrion	14.02	25.34
Bra008100.1-P	Field mustard	cytosol	7.58	24.39
KRH24832	Soybean	endoplasmic reticulum	12.88	24.11
EES02151	Sorghum	mitochondrion, plastid	12.88	23.29
Bra025205.1-P	Field mustard	nucleus	20.45	23.28
Bra032933.1-P	Field mustard	nucleus	21.21	23.05
Bra005798.1-P	Field mustard	nucleus	21.21	18.3
KRH40931	Soybean	mitochondrion	13.64	15.58
Bra003841.1-P	Field mustard	cytosol, nucleus, plastid	12.12	12.45
Bra031244.1-P	Field mustard	plastid	14.77	10.46

Protein Annotations

EnsemblPlants:Bra008142.1	EnsemblPlants:Bra008142.1-P	EnsemblPlantsGene:Bra008142	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR45502	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000254594C	UniProt:M4CV95	MapMan:16.12.5.2	:	:

Description

AT1G74230 (E=2e-055) GR-RBP5 | GR-RBP5 (glycine-rich RNA-binding protein 5); ATP binding / RNA binding

Coordinates

chrA02:+:13396699..13398133

Molecular Weight (calculated)

26641.9 Da

IEP (calculated)

4.449

GRAVY (calculated)

-0.569

Length

264 amino acids

Sequence
(BLAST)

001: MAFLSKVGRI FRQTSAHVTA SNSMLQSIRC MSSSKIFVGG ISYSTDEFGL REAFSKYGEV VDAKIIVDRE TGRSRGFAFV TFTSTEEASN AMELDGQDLH
101: GRRIRVNYAT ERGSGFGGRG FGGPGGGYGA PAGGYGGGGG GGYGTPSGGY GGGSSYGGNA GGGGYGGNSA YGGNAGGDGY GSNFGVAGGV GGSDNFAQGS
201: SSSAGFDDKF SSDVPLGNDT DHQLESGEQF GGSDNQFGDS ENRQTEVGPD GFDQTDDGDV AKRA

Best Arabidopsis Sequence Match ( AT1G74230.1 )
(BLAST)

001: MAFLSKVGRL FSQTSSHVTA SSSMLQSIRC MSSSKIFVGG ISYSTDEFGL REAFSKYGEV VDAKIIVDRE TGRSRGFAFV TFTSTEEASN AMQLDGQDLH
101: GRRIRVNYAT ERGSGFGGRG FGGPGGGYGA SDGGYGAPAG GYGGGAGGYG GNSSYSGNAG GGGGYGGNSS YGGNAGGYGG NPPYSGNAVG GGGGYGSNFG
201: GGGGYGVAGG VGGSENFAQG SSTNAGFDDK FESNQPLGND TDHQTESGLG GDEQFGGSDN QFGDAENGNT ENGPVGFDQT DDGDVAKRA

Arabidopsis Description

RBG5Glycine-rich RNA-binding protein 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9C909]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.